Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 >seq5 Length=3070904 Score = 138 bits (152), Expect = 1e-27 Identities = 284/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCG-GCACACAGGC--CCGATACAACCTT 34210 ||||| || || || || ||| | ||| | |||| || | | || ||| | || ||| Sbjct 776973 GACCGAACTGGCACTGGCACCTTGTCCCTCTTCGCGCCCCCGAGCTTCCGGTTCAGCCTG 777032 Query 34211 -CGG--GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| |||| | || ||| ||||||||||| | |||| ||| |||||||||||| Sbjct 777033 GCGGACGGCGCTCTGCCTCTGTTGACGACGAAAAGGGTGTTTTGGCGCGGCGTGGTCGAG 777092 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | | ||| |||| | | || |||||| | | || ||| Sbjct 777093 GAGCTGCTGTGGTTCATCAAGGGCTCCACCGATGCTAACGAGCTCAAGGCTAAAGGCGTG 777152 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385 |||||||||| |||| || || || | ||||||||| ||| || || | Sbjct 777153 GGCATCTGGGACGGCAACGGCTCGCGCGAGTACCTGGACAAGGTCGGCCTGTCGCACTAC 777212 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | |||| || ||||||||||||| || || || ||| | ||||||||||| |||| Sbjct 777213 CG--CCAGGGGGAGCTGGGCCCGGTCTATGGCTTTCAATGGCGGCACTTTGGGGCCGAGT 777270 Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 | ||| || ||||||||| || ||||| | ||||||||||| | || |||| Sbjct 777271 ACAAGGGCTTTGACGCGGACTATCAAGGTCAGGGCGTCGACCAGCTGCAAGAGGTCATCG 777330 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCG 34561 ||| | | ||||| ||||| | ||| | |||| || ||||||||| Sbjct 777331 ACAAGATTCGCCACAACCCAACGGACAGGCGAATCATCATGTCTGCTTGGAACCCG 777386 Score = 138 bits (152), Expect = 1e-27 Identities = 284/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||| || |||| | ||| | ||||| ||||| | | ||||||| Sbjct 777386 CGGGTTCCAAGCAGACATGATGATTCGCCTGTCCGTTGGGTTGTGGCGAATCTTGTCGAT 777327 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTC 6903 || | ||||||||||| | ||||| || ||||||||| || ||| ||||| Sbjct 777326 GACCTCTTGCAGCTGGTCGACGCCCTGACCTTGATAGTCCGCGTCAAAGCCCTTGTACTC 777267 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 ||||||||||| | ||| || || || ||||||||||||| || |||| | | Sbjct 777266 GGCCCCAAAGTGCCGCCATTGAAAGCCATAGACCGGGCCCAGCTCCCCCTGG--CGGTAG 777209 Query 6964 TGGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACC 7021 || || ||| ||||||||| | || || || |||| |||||||||| ||| Sbjct 777208 TGCGACAGGCCGACCTTGTCCAGGTACTCGCGCGAGCCGTTGCCGTCCCAGATGCCCACG 777149 Query 7022 CCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCG 7081 || | | |||||| || | | |||| ||| | | ||||||||||||||||||| Sbjct 777148 CCTTTAGCCTTGAGCTCGTTAGCATCGGTGGAGCCCTTGATGAACCACAGCAGCTCCTCG 777089 Query 7082 ACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC--CCG-AAGG 7138 |||||||| ||| |||| | ||||||||||| ||| || | |||| ||| ||| Sbjct 777088 ACCACGCCGCGCCAAAACACCCTTTTCGTCGTCAACAGAGGCAGAGCGCCGTCCGCCAGG 777029 Query 7139 TTGTATCGG--GCCTGTGTGC-CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191 || | ||| || | | || |||| | ||| | ||| || || || || ||||| Sbjct 777028 CTGAACCGGAAGCTCGGGGGCGCGAAGAGGGACAAGGTGCCAGTGCCAGTTCGGTC 776973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262293537680