Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 seq2 107 4e-18 >seq1 Length=5326569 Score = 127 bits (140), Expect = 4e-24 Identities = 134/174 (77%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || | ||||||||| | || || || ||||||||| Sbjct 2645574 TTCTGGATGTTGTAGTCGGACAGGGTCCTGCCATCCTCCAACTGCTTGCCAGCAAAGATC 2645515 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||||| |||||| || || ||||||||||| |||||||| || || |||| ||| Sbjct 2645514 AGGCGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGGCGTCG 2645455 Query 283032 ATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 || | || || |||| ||||| || | ||||| ||||| || ||||| ||||| Sbjct 2645454 ATCGAGT-CGGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTT 2645402 Score = 102 bits (112), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||||| || || ||||| ||| || ||||||||||| |||||||| Sbjct 2644779 TTTCCAGCRAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 2644720 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || |||| ||||| | || || |||| |||||||| | ||||| ||||| || || Sbjct 2644719 GCCTTGACGGCGTCGATCGAGT-CGGAGCTCTCGACTTCCAAGGTGATGGTCTTGCCGGT 2644661 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || || ||||| Sbjct 2644660 CAAGGTCTTGACAAAGATTTGCAT 2644637 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| ||||||||||||| || || | ||| ||||| |||||||| || |||||||| Sbjct 2644534 TTTTGAATGTTGTAGTCAGACAGGGTCCTGCCGTCCTCGAGTTGTTTGCCAGCAAAGATG 2644475 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC 283018 | || |||||||| ||||| ||||||||||| || ||||| || Sbjct 2644474 AGGCGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGC 2644428 >seq2 Length=4543988 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| || || || || || ||||||| || || ||||| ||| || |||||||||| Sbjct 1346990 CCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT 1347049 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | |||||||| || || || | ||||| | ||| | ||||||||| | ||||| | Sbjct 1347050 CCTGGATCTTGGCCTTGACAGCGTCGATCGAGTCGCTCGATTCGACTTCCAAGGTGATGG 1347109 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || ||||| ||||| ||||| |||||||| Sbjct 1347110 TCTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 1347143 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGAT 282970 || |||||||||||||| | |||| || ||||| ||||| || || || ||||| ||||| Sbjct 1345911 TTCTGGATGTTGTAGTCGGACAAG-GTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGAT 1345969 Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC 283018 ||| || || |||||| || || |||||||||||||| || || || Sbjct 1345970 CAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATTTTGGC 1346017 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| || || | ||| ||||| || || || ||||| |||||| Sbjct 1347249 TTCTGGATGTTGTAGTCAGACAGAGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1347308 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC 283018 || || || |||||| || || |||||||| ||||| ||||| || Sbjct 1347309 AAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGAATCTTGGC 1347355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738945184426