Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidiopsis_20lactophilus_20[genbank_20GCA_5F001599975.1_202016 -03-01] 19 sequences; 22,180,604 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq1 91.5 1e-13 >seq2 Length=4543988 Score = 105 bits (116), Expect = 6e-18 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| | ||| || |||| |||||||||||||||||||| | Sbjct 1345909 CCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1345968 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 ||| |||||| ||||| | ||| | || |||||||| | ||| |||| || Sbjct 1345969 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT-CTTGAATTTTGGC 1346017 Score = 104 bits (114), Expect = 2e-17 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 |||||||||||||| ||||| ||||||||||| ||||| | || | || |||||||||| Sbjct 1346992 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1347051 Query 41771 ATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| || ||| || || || | | ||||||||| || || |||| || || | Sbjct 1347052 TGGATCTTGGCCTTGACAGCGTCG--ATCGAGTCGCTCGATTCGACTTCCAAGGTGATGG 1347109 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || |||| ||||| ||||| ||||||||| Sbjct 1347110 TCTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 1347144 Score = 86.0 bits (94), Expect = 6e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || || | |||| |||||||||||||||||||| | Sbjct 1347247 CCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1347306 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 ||| |||||| ||||| | ||| | | |||||| || Sbjct 1347307 TCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATC 1347343 >seq1 Length=5326569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| |||||||| ||||| || ||||| | |||| ||||| || ||||| || || | Sbjct 2644536 CCTTTTGAATGTTGTAGTCAGACAGGGTCCTGCCGTCCTCGAGTTGTTTGCCAGCAAAGA 2644477 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 | |||||||||||||| | ||||| || |||||||||| Sbjct 2644476 TGAGGCGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 2644439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303890202800