Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-22 seq5 104 5e-17 seq3 100 6e-16 seq12 98.7 2e-15 seq6 98.7 2e-15 seq1 98.7 2e-15 >seq16 Length=487666 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 || || |||||||| || ||||| || ||||| || ||||| || |||| |||| ||| Sbjct 197620 CAGGCTTCAACATCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACA 197561 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || || ||||| || || ||||| || || |||||||| |||||||| ||| Sbjct 197560 CCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAA 197501 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 |||||||||||||| ||||| ||| | || ||| ||| |||||||||||| Sbjct 197500 AATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCG 197441 Query 61269 CCCAATAGA-GGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGC 61318 || | ||| || | || || || || |||||||| ||| ||| || || Sbjct 197440 CCAAGAAGAGGGAGAACA-TTCGTCACGCGTAAAATAACGCGGGCCGTGGC 197391 >seq5 Length=1549313 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 319804 TCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC 319863 ||||| || |||| |||||| || ||||| |||| | | |||||| || ||||| Sbjct 1186624 TCGGATCCATCGATATCGTGCTCAACGTAGAAAGTTCTGACCTCATCCGGGGATGGGAAA 1186683 Query 319864 CCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGC 319923 || || | ||| |||||| ||||| | ||| ||||| || || || | |||||| Sbjct 1186684 CCCTCGACCTGACCGTTCTGGATAGCTCTCATGAGGGTAGACTTTCCGGAACCGTTTCTG 1186743 Query 319924 CCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATT 319983 || || ||||||||||||| || || || || || | |||||| ||||| Sbjct 1186744 CCGCAGAGACCGTAGCGGTGGCCTCGCTTGAGTCGGAGAGTAGCAGTGTTCAAGAGAATC 1186803 Query 319984 TTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || ||||||| || ||||| |||| ||| | || ||||| ||||| Sbjct 1186804 TTGGCACCATAAGCGAGAGAGAATTGACAGTTGCAAAGATCTTCACC 1186850 >seq3 Length=2053931 Score = 100 bits (110), Expect = 6e-16 Identities = 239/354 (68%), Gaps = 22/354 (6%) Strand=Plus/Plus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGA------AGAAGTGTCTTTGTACACT 282560 |||||||||| ||| | | || || | |||||| |||||||| | || Sbjct 65954 TCGGTCATGACCATAAGCTTTCCATAACGCAGAGACTCCACAGAAGTGT------AAGCT 66007 Query 282561 TTACCGGTTTGAAGGCCCAAAATTTGTTTGAGC-GCGGTGATTTCTTCGTTCTTTGTGA- 282618 || || |||| | ||| ||||| | ||| || ||| | ||||| | ||||| ||| | Sbjct 66008 TTTCCATTTTGTAAGCCTAAAATCTTTTTCAGATGCGCT-ATTTCCTGGTTCTCTGTCAA 66066 Query 282619 -TACTTGCCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677 | ||||||| | ||||| || || || || | ||| || | || || ||||| ||| Sbjct 66067 TTGCTTGCCAACG--GCATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCA 66124 Query 282678 TATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCC 282737 || | ||||| || ||||| || || || | ||| |||| |||| ||||| || || Sbjct 66125 TAGGTATCGCGGCCAACCACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCT 66184 Query 282738 TCCGTCAAGATGAGAGTACACAT--CTTACTATGATTTGTGCCCGCCCATGCAGCATCGT 282795 || || | ||||| || || || | | | || || ||||| ||| ||||||| Sbjct 66185 TCTGTGAGAATGAGCGTGCA-ATGGCGTGC-ATCTTTCGTGCCAGCCTTGTTGGCATCGT 66242 Query 282796 TTAGTTTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCA 282849 || |||| |||||| || || ||| ||| | |||||||||||||||| Sbjct 66243 CCAGCTTAGCGATGCCAAGCATGCGCGACCGCTTAGTTCCGTCGGTTTTCTTCA 66296 >seq12 Length=600358 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| |||||| |||||||| | ||||||||||||||| Sbjct 511117 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAGC 511176 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 511177 CCCACGTTGGGC 511188 >seq6 Length=1290484 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 || ||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||| Sbjct 603103 CGTTTGCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGATTGTCGCGGGTT 603162 Query 165765 CGAGCCCCACGATGGGC 165781 |||||||| || ||||| Sbjct 603163 CGAGCCCCGCGTTGGGC 603179 >seq1 Length=2538488 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| |||||| |||||||| | ||||||||||||||| Sbjct 262305 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAGC 262246 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 262245 CCCACGTTGGGC 262234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823064817470