Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq16 122 2e-22
seq5 104 5e-17
seq3 100 6e-16
seq12 98.7 2e-15
seq6 98.7 2e-15
seq1 98.7 2e-15
>seq16
Length=487666
Score = 122 bits (134), Expect = 2e-22
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148
|| || |||||||| || ||||| || ||||| || ||||| || |||| |||| |||
Sbjct 197620 CAGGCTTCAACATCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACA 197561
Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208
|| || || ||||| || || ||||| || || |||||||| |||||||| |||
Sbjct 197560 CCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAA 197501
Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268
|||||||||||||| ||||| ||| | || ||| ||| ||||||||||||
Sbjct 197500 AATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCG 197441
Query 61269 CCCAATAGA-GGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGC 61318
|| | ||| || | || || || || |||||||| ||| ||| || ||
Sbjct 197440 CCAAGAAGAGGGAGAACA-TTCGTCACGCGTAAAATAACGCGGGCCGTGGC 197391
>seq5
Length=1549313
Score = 104 bits (114), Expect = 5e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 319804 TCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC 319863
||||| || |||| |||||| || ||||| |||| | | |||||| || |||||
Sbjct 1186624 TCGGATCCATCGATATCGTGCTCAACGTAGAAAGTTCTGACCTCATCCGGGGATGGGAAA 1186683
Query 319864 CCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGC 319923
|| || | ||| |||||| ||||| | ||| ||||| || || || | ||||||
Sbjct 1186684 CCCTCGACCTGACCGTTCTGGATAGCTCTCATGAGGGTAGACTTTCCGGAACCGTTTCTG 1186743
Query 319924 CCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATT 319983
|| || ||||||||||||| || || || || || | |||||| |||||
Sbjct 1186744 CCGCAGAGACCGTAGCGGTGGCCTCGCTTGAGTCGGAGAGTAGCAGTGTTCAAGAGAATC 1186803
Query 319984 TTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
|| ||||||| || ||||| |||| ||| | || ||||| |||||
Sbjct 1186804 TTGGCACCATAAGCGAGAGAGAATTGACAGTTGCAAAGATCTTCACC 1186850
>seq3
Length=2053931
Score = 100 bits (110), Expect = 6e-16
Identities = 239/354 (68%), Gaps = 22/354 (6%)
Strand=Plus/Plus
Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGA------AGAAGTGTCTTTGTACACT 282560
|||||||||| ||| | | || || | |||||| |||||||| | ||
Sbjct 65954 TCGGTCATGACCATAAGCTTTCCATAACGCAGAGACTCCACAGAAGTGT------AAGCT 66007
Query 282561 TTACCGGTTTGAAGGCCCAAAATTTGTTTGAGC-GCGGTGATTTCTTCGTTCTTTGTGA- 282618
|| || |||| | ||| ||||| | ||| || ||| | ||||| | ||||| ||| |
Sbjct 66008 TTTCCATTTTGTAAGCCTAAAATCTTTTTCAGATGCGCT-ATTTCCTGGTTCTCTGTCAA 66066
Query 282619 -TACTTGCCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677
| ||||||| | ||||| || || || || | ||| || | || || ||||| |||
Sbjct 66067 TTGCTTGCCAACG--GCATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCA 66124
Query 282678 TATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCC 282737
|| | ||||| || ||||| || || || | ||| |||| |||| ||||| || ||
Sbjct 66125 TAGGTATCGCGGCCAACCACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCT 66184
Query 282738 TCCGTCAAGATGAGAGTACACAT--CTTACTATGATTTGTGCCCGCCCATGCAGCATCGT 282795
|| || | ||||| || || || | | | || || ||||| ||| |||||||
Sbjct 66185 TCTGTGAGAATGAGCGTGCA-ATGGCGTGC-ATCTTTCGTGCCAGCCTTGTTGGCATCGT 66242
Query 282796 TTAGTTTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCA 282849
|| |||| |||||| || || ||| ||| | ||||||||||||||||
Sbjct 66243 CCAGCTTAGCGATGCCAAGCATGCGCGACCGCTTAGTTCCGTCGGTTTTCTTCA 66296
>seq12
Length=600358
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 511117 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAGC 511176
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 511177 CCCACGTTGGGC 511188
>seq6
Length=1290484
Score = 98.7 bits (108), Expect = 2e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764
|| ||||||| ||||||||||||||||||| ||||||||||||||| | |||| |||||
Sbjct 603103 CGTTTGCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGATTGTCGCGGGTT 603162
Query 165765 CGAGCCCCACGATGGGC 165781
|||||||| || |||||
Sbjct 603163 CGAGCCCCGCGTTGGGC 603179
>seq1
Length=2538488
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 262305 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAGC 262246
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 262245 CCCACGTTGGGC 262234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823064817470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |