Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq18 98.7 8e-16
>seq18
Length=480229
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || | ||| || | ||| | ||| ||||| || |||||||| || ||||
Sbjct 342089 CCACCTCTAAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAA 342030
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || ||||||||||||| || || ||| |||| | || ||| ||||| ||
Sbjct 342029 AGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGG 341970
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| || || | | | || || | ||| |
Sbjct 341969 ATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACT 341910
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||||| |||||||| || | ||| |||||||| || |||||
Sbjct 341909 TCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| ||| | ||||| ||||| || ||||||||||| |
Sbjct 341633 CCACCACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAG 341574
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| | | ||||| | || || || || | ||||| | || ||||| ||
Sbjct 341573 AGGGTTCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGA 341514
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| |||||| | ||||
Sbjct 341513 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACC 341454
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||||||| ||||| || || || || || || |||||
Sbjct 341453 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422258844906404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |