Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 seq1 127 2e-24 seq18 96.9 4e-15 >seq2 Length=2148610 Score = 156 bits (172), Expect = 4e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||||||||| || |||||| | | || ||| | |||| || || ||| | Sbjct 698549 AAGGCCGAGTGGGCTCTTACCTGGATTTCAGACAAGGAGTCTACCTTTGGTGAACGCATC 698608 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||| || || || || ||||| ||||||| || ||| ||| || |||| |||||| Sbjct 698609 GTGGCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCTCTTTTGCTTCCATCTTTTGG 698668 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| ||||| |||||||| ||| |||| || ||||||||||||||| || || Sbjct 698669 CTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATCTCGAGAGAT 698728 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || ||||| ||| ||||||||| || || || ||| Sbjct 698729 GAAGGTCTACATACCGACTTTGCTTGCTTACTCTTC 698764 Score = 107 bits (118), Expect = 2e-18 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 116672 TGGACCGTCGAGGAGGTGGACCTGTCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAA 116727 ||||| | ||||||| |||| || |||||||| | | | ||||||||| ||| |||| Sbjct 698114 TGGACTGCCGAGGAGATGGATCTCTCCAAGGATCTCCA-CGACTGGGACAACCGCATGAA 698172 Query 116728 CGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCAT 116787 | | |||| || || ||| ||| || || ||||| || || | ||| || || Sbjct 698173 CAAGGACGAAAAGCACTTTATCTCGCATGTCCTCGCCTTCTTTGCTTCTGCCGATGGGAT 698232 Query 116788 CGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTG 116847 |||||||||||| || ||||||| ||| | | || || ||||| ||||| || | || Sbjct 698233 CGTCAACGAGAACCTCCTCGAGCGATTCTCAAACGAAGTACAGGTAGCCGAAGCAAGATG 698292 Query 116848 CTTCTACGGCTTTCAGATC 116866 |||||| ||||| |||||| Sbjct 698293 CTTCTATGGCTTCCAGATC 698311 >seq1 Length=2538488 Score = 127 bits (140), Expect = 2e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 40718 GCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAA 40777 |||| ||||||||| |||| ||||| || |||||| | | | | ||||| || | Sbjct 608135 GCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGA 608076 Query 40778 TTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGC 40837 | | ||||| ||||||||||| | ||||| || ||||| |||| ||| || || |||| Sbjct 608075 TCCAGGACAAGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGC 608016 Query 40838 TGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 | || |||| || |||||| |||||||||||||||||||||| |||| || || Sbjct 608015 TCGAAGACGGACGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 607961 >seq18 Length=480229 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || ||||| || || ||| | || || ||| | | Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| || ||||||||||| || | ||||| Sbjct 341695 GATACCATTGACAACG-TCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 341753 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || || || ||||| || || | || || || || ||||| Sbjct 341754 ACAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAA 341813 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || |||||||| || Sbjct 341814 CATTCAGAAGGAGTCGACCCTGCATCTGGT 341843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || || || | | Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||| || | ||||| Sbjct 341467 GATACCATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 341525 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || || || | || || | || |||||| ||||| || Sbjct 341526 ACAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAA 341585 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 341586 CATCCAGAAGGAATCCACCCTTCATCTGGT 341615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218755623440