Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18 104 4e-17 seq6 91.5 2e-13 >seq18 Length=480229 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| || || ||||| || || || | ||| | ||| | | Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || |||||||||||||| || || ||||| || ||| Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| || | || ||| | || || || |||||| || Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAAC 341814 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || ||||| ||||| | || | ||||||||||| Sbjct 341815 ATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGGTAT 341864 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| | ||| | || || | Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || || || || || || || || || || || || ||| Sbjct 341467 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAA 341526 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| || || || || |||||||||||| | ||||| | ||| ||||| Sbjct 341527 CAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAAC 341586 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| ||||| | || |||| |||||||| Sbjct 341587 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGGTAT 341636 >seq6 Length=1290484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 205654 GGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA 205713 || || || ||||| || | ||| ||| | | |||||| | ||||| |||||| Sbjct 354252 GGGTTGTTCTTTATCTTGTCAATACATTGTTTGAGTTGATCTACACCTTGTCCCGTATAA 354193 Query 205714 TTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGA 205773 | | ||| | |||| | || |||||||| | ||||||||||||||| || || Sbjct 354192 TCAGCATCGGCACTCGTATACGTCGCTCCAAAATGCCTCCATTGAAAACCATAGACCGGT 354133 Query 205774 CCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatcca 205833 || | ||| ||||| | |||||| || || ||| || | | ||| | | || ||| Sbjct 354132 CCAAGATCGCCTTCCTCTCTATCTTTCAATCCAATCTTATCGAGATACTCTCTCGAACCA 354073 Query 205834 ttttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGAT 205893 ||| ||||||||||||| | |||||| || ||| | || | | ||||| || | Sbjct 354072 TTTCCATCCCAAATATGAACGTCTTTATCTTGTAGTAACTTGTTGTGTGTTGAACCGCGT 354013 Query 205894 ATAAACCATAATAATTCTTC 205913 | ||||||| | |||||| Sbjct 354012 ACGAACCATAGGAGTTCTTC 353993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455348419200