Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18 102 7e-17 seq1 96.9 3e-15 >seq18 Length=480229 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || ||||| || ||||||||||||| || |||| | ||| ||| |||||||| |||| Sbjct 341831 GTCGACTCCTTCTGAATGTTGTAAT--CTGATAGCGTACGTCCATCTTCGAGCTGCTTTC 341774 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | ||||| || ||||| || |||||||| || ||| ||| || | Sbjct 341773 CAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAATCTTGGACT 341714 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | ||| || | || ||||| | ||| | || ||||| ||||| | Sbjct 341713 TGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTCTTGCCAGTCAGGG 341654 Query 118720 TTTTTACAAAAATCTGCAT 118738 | ||||| || |||||||| Sbjct 341653 TCTTTACGAAGATCTGCAT 341635 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||||| |||||||||||||| | ||| | ||||| ||||| Sbjct 342065 TGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGC 342006 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| | || | ||||| || ||||| || ||||| ||||||||| || || Sbjct 342005 TTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTG 341946 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| | |||||| || | ||| | || ||||| ||| Sbjct 341945 CTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTC 341886 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 341885 AGCGTCTTGACAAAGATCTGCAT 341863 >seq1 Length=2538488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | || || || |||||||| Sbjct 607960 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTG 608019 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| || ||||| || ||||| || |||||||||||||| || || Sbjct 608020 CTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTT 608079 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 || || | |||| |||||| | | ||||||||||| ||| | || |||| Sbjct 608080 GGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830035175748