Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18 89.7 3e-13 seq1 82.4 5e-11 >seq18 Length=480229 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| |||||||| |||||||| || || || | |||| Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || ||||| | ||||| |||||| || | || |||||||| Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | |||| || ||||| |||| || || || Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 341894 TTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 >seq1 Length=2538488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || || |||| || | |||||| || ||||| Sbjct 607973 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAAG 608032 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| |||||| || | || ||||||||| ||||| ||| | || | Sbjct 608033 ATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 608092 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGC 34361 | || | |||| || ||||| || | |||||||| |||| Sbjct 608093 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071728316640