Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-19 >seq18 Length=480229 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || || ||| | || || || | ||| Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| ||| || | | |||||||||||| | || |||||| Sbjct 341923 GACACCATTGATAATGTCAA---GAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 341979 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||||| | || || ||||| || ||| |||| ||| | |||| | ||||| Sbjct 341980 CAACAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTAC 342039 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| ||||| || ||||| ||||| || || | || || || ||| Sbjct 342040 AACATTCAGAAAGAGTCTACTCTCCATCTCGTCCTCCGTCTTAGAGGTGGT 342090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || || | || Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| ||| || | | ||||||||| ||| | ||||||||| Sbjct 341467 GATACCATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 341523 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGAT 31366 || || ||||| || ||||| || || || || || || | | || || | | || Sbjct 341524 CAACAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGA-TGGACGAACCCTCTCA--GAC 341580 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||| || ||||||||||| || |||| | || |||| Sbjct 341581 TATAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGGTA 341635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || || ||| | || || ||| | || Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || || || || ||| | || |||||||| Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 ||||| | || || ||||| || ||| | ||||| | | | |||| | ||||| Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGA-TGGACGTACGCTATCA--GATTAC 341811 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||| || |||||||| ||| | ||| | || |||| Sbjct 341812 AACATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGGTA 341863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766015526480