Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq18 111 1e-19
>seq18
Length=480229
Score = 111 bits (122), Expect = 1e-19
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||||||||| || || ||| | || || || | |||
Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | || | ||||| ||| || | | |||||||||||| | || ||||||
Sbjct 341923 GACACCATTGATAATGTCAA---GAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 341979
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|| ||||| | || || ||||| || ||| |||| ||| | |||| | |||||
Sbjct 341980 CAACAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTAC 342039
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||||| ||||| || ||||| ||||| || || | || || || |||
Sbjct 342040 AACATTCAGAAAGAGTCTACTCTCCATCTCGTCCTCCGTCTTAGAGGTGGT 342090
Score = 93.3 bits (102), Expect = 4e-14
Identities = 165/235 (70%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || ||||| | || || || | ||
Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|| | |||| | ||||| ||| || | | ||||||||| ||| | |||||||||
Sbjct 341467 GATACCATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 341523
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGAT 31366
|| || ||||| || ||||| || || || || || || | | || || | | ||
Sbjct 341524 CAACAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGA-TGGACGAACCCTCTCA--GAC 341580
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || ||||| || ||||||||||| || |||| | || ||||
Sbjct 341581 TATAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGGTA 341635
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| ||||| ||||| || || ||| | || || ||| | ||
Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | ||||| | || || || || ||| | || ||||||||
Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369
||||| | || || ||||| || ||| | ||||| | | | |||| | |||||
Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGA-TGGACGTACGCTATCA--GATTAC 341811
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || ||||| || |||||||| ||| | ||| | || ||||
Sbjct 341812 AACATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGGTA 341863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766015526480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |