Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 3e-18
seq5 98.7 1e-15
>seq2
Length=2148610
Score = 107 bits (118), Expect = 3e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016
|| || || || ||| || ||||| || ||||| || || ||||||||||||||
Sbjct 698757 AAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTC 698698
Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076
| || ||||| || || ||||| || |||||||| ||||| ||||| || ||||| |||
Sbjct 698697 AAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAG 698638
Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAAC 50105
||||| || ||||| || ||||| || ||
Sbjct 698637 AAGATACCCTCTACAGCAGCAAACGCCAC 698609
>seq5
Length=1549313
Score = 98.7 bits (108), Expect = 1e-15
Identities = 201/299 (67%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|||||||| ||||| || || | | ||| || ||| | ||||| | | | |
Sbjct 643766 TCGAACTCCTCTCCATGCACTTCATGCATTCCGGGCGCTTCAGCGGGACAGAAAAGAGGC 643707
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980
|| || || | | || |||||| ||| || | || |||||||||||||| | ||
Sbjct 643706 CAGTCACCGTTCTGCTCGACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCAAAGAAA 643647
Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040
|| ||||| | ||| || || ||||| |||||| ||||| ||||| | |
Sbjct 643646 AGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAGTCAAAG 643587
Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100
||||| | |||||| || || | ||| || || | | || ||||| ||||| || |||
Sbjct 643586 ATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCC 643527
Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
||||| | || | || || || || |||||| || ||| || | |||||||||||
Sbjct 643526 TGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCGGTACGATACCATTGGA 643468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268180493160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |