Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 107 3e-18 seq5 98.7 1e-15 >seq2 Length=2148610 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 || || || || ||| || ||||| || ||||| || || |||||||||||||| Sbjct 698757 AAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTC 698698 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076 | || ||||| || || ||||| || |||||||| ||||| ||||| || ||||| ||| Sbjct 698697 AAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAG 698638 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||||| || ||||| || ||||| || || Sbjct 698637 AAGATACCCTCTACAGCAGCAAACGCCAC 698609 >seq5 Length=1549313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| ||||| || || | | ||| || ||| | ||||| | | | | Sbjct 643766 TCGAACTCCTCTCCATGCACTTCATGCATTCCGGGCGCTTCAGCGGGACAGAAAAGAGGC 643707 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | | || |||||| ||| || | || |||||||||||||| | || Sbjct 643706 CAGTCACCGTTCTGCTCGACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCAAAGAAA 643647 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || ||||| | ||| || || ||||| |||||| ||||| ||||| | | Sbjct 643646 AGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAGTCAAAG 643587 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||| | |||||| || || | ||| || || | | || ||||| ||||| || ||| Sbjct 643586 ATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCC 643527 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | || | || || || || |||||| || ||| || | ||||||||||| Sbjct 643526 TGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCGGTACGATACCATTGGA 643468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268180493160