Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 1e-12 >seq18 Length=480229 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| ||| || || | |||||||| || | || | | |||| |||| || Sbjct 342066 ATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTG 342007 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATC-A 43024 || || |||||||||||||||||||| |||| || | ||||| || || |||| Sbjct 342006 CTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 341947 Query 43025 ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGG 43084 ||| ||||| | ||| |||||| || |||||| || | || || || || || | Sbjct 341946 GCTC-TTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTG 341888 Query 43085 TTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || ||||| || ||||| Sbjct 341887 TCAGCGTCTTGACAAAGATCTGCAT 341863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369279292002