Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq5 93.3 6e-14 >seq2 Length=2148610 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || || || ||| || ||||| |||||||| || | |||||||||||||| Sbjct 698757 AAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTC 698698 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 | || ||||| || || ||||| || |||||||| || || ||||| || ||||| ||| Sbjct 698697 AAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAG 698638 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| || ||||| || ||||| || Sbjct 698637 AAGATACCCTCTACAGCAGCAAACGC 698612 >seq5 Length=1549313 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||||| ||| || | || |||||||||||||| | || || ||||| | ||| Sbjct 643688 ACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCAAAGAAAAGGTCTCTAGCTCTGACT 643629 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || ||||| |||||| ||||| ||||| | | ||||| | |||||| || Sbjct 643628 TCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAGTCAAAGATATCTGCATGCCATGGC 643569 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| || || | | || || || ||||| || |||||||| | || | || Sbjct 643568 TCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGATCAACATAACGCGCA 643509 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || || || |||||| || ||| || | ||||||||||| Sbjct 643508 GTATTGTTGAAAACTCGCAGCATCGGTACGATACCATTGGA 643468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138621142440