Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 seq1 86.0 9e-12 seq5 84.2 3e-11 >seq2 Length=2148610 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || || || |||||||| |||||||| || || |||||| ||||||||||| Sbjct 698609 GTGGCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCTCTTTTGCTTCCATCTTTTGG 698668 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||||||||| |||||||| || ||||| |||||| | || || |||| Sbjct 698669 CTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATCTCGAGAGAT 698728 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 || || ||||| |||||||| Sbjct 698729 GAAGGTCTACATACCGACTTTGC 698751 >seq1 Length=2538488 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || || || |||||| | || |||||||||||| | || || | Sbjct 294331 CCGTGGGTAAGGTGACCACCATCTGGCAGACCTAGACCCATGATTCTATCTTGGGGCTGG 294390 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || ||||| | ||||||||||||| |||| || |||||||| || || || Sbjct 294391 ATGAGAGCAGTGAATGCGGCAAAGTTGGCGGTCGAACCGGAGTACGGCTGGACGTTGACG 294450 Query 127567 CCCCA-----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 ||||| || || || | || ||| ||| |||| || |||| ||| | Sbjct 294451 CCCCAGACCTTTGGGTCTAGGTC-----GAAGGCTGCGAGAGCACGTCGCTGACATAGGA 294505 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAG 127656 | |||| ||||||| ||||||| || |||||| Sbjct 294506 GCTCGAGCTGATCGATGTACTCGTTGCCGCCATAG 294540 >seq5 Length=1549313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACA 98094 ||||||||||| ||||||||||| | |||| | || | ||||| ||| |||| ||| Sbjct 644754 ATCTACAAGACAGTCTGGGAGAT--CAGCCAAAAAGCCATCATCGACATGTCTGCTGACC 644811 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 | ||| | |||||||||| ||||| | || | || |||| | |||||| Sbjct 644812 GTGGTCCGTTCATTGACCAGTCACAATCACTGAACGTACAC-TTGCAAT---CGCCTACA 644867 Query 98155 GTCGTA----TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 ||| | | || || || |||||||||| ||||| ||||| | || ||||| ||| Sbjct 644868 TTCGCACAGCTCACATCCATGCACTTTTACGGGTGGAAGAAGGGATTGAAAACGGGAATG 644927 Query 98211 TACTATCTGAGAACAAAG 98228 |||||||| |||| ||| Sbjct 644928 TACTATCTCCGAACCAAG 644945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058560836440