Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq18 118 8e-22
>seq18
Length=480229
Score = 118 bits (130), Expect = 8e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | | || | ||| || || || ||||| || |||||||||||
Sbjct 342089 CCACCTCTAAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAA 342030
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | || |||| || | || || ||||| | ||||| || ||||||||| |||
Sbjct 342029 AGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGG 341970
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || |||||||| ||| | || ||||| ||| | || ||
Sbjct 341969 ATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACT 341910
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||||||| || || |||||||| || || ||||| || ||||||
Sbjct 341909 TCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCATA 341862
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| || | | ||| | ||| ||||| || || || || ||||||||||| |
Sbjct 341861 CCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGAT 341802
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| | || || ||||| | ||||| || ||||||||| ||||
Sbjct 341801 AGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGA 341742
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || ||||| || ||| ||| ||| || | || |||||||| | ||||||
Sbjct 341741 ATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACC 341682
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | |||||| || || || ||||| || ||||| || || ||||||
Sbjct 341681 TCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCATA 341634
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||||||||| || || || ||||| || || || ||| | || ||
Sbjct 341616 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGTTCGTCCATCCTC 341557
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|||||| || || ||| | || | ||||||||||||| ||||| || || |||||
Sbjct 341556 TAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCCCTCCTTGTCCTG 341497
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| |||||||| || | || |||||||| || || || | || ||||| ||
Sbjct 341496 GATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGAGTGATGGTCTT 341437
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || || || || ||||||
Sbjct 341436 TCCGGTCAAGGTCTTCACGAAGATCTGCATA 341406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362178895429929
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |