Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 150 3e-32 seq10 147 3e-31 seq26 132 8e-27 >seq1 Length=2538488 Score = 150 bits (166), Expect = 3e-32 Identities = 120/142 (85%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||||| | |||| ||||||||||| ||||| ||||| ||||| Sbjct 804585 GCCAAGCGACACCGCAAGATCT-TGAGAGACAACATCCAAGGTATCACAAAGCCTGCTAT 804527 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||| Sbjct 804526 CCGTCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTATGAAGAGAC 804467 Query 16552 TCGTGATGTTTTGAAGATCTTC 16573 |||| ||| | ||||||||| Sbjct 804466 CCGTGGTGTCCTAAAGATCTTC 804445 Score = 118 bits (130), Expect = 2e-22 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| |||| || |||| |||||||| |||||||| ||||| || || Sbjct 1947708 GCCAAGCGACACCGCAAGATC-CTCAGAGACAACATCCAGGGAATCACAAAGCCGGCGAT 1947766 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || |||||||| ||||||||| ||||||| || |||| || |||| Sbjct 1947767 CCGTCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 1947826 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 | | ||| | ||||||||||| Sbjct 1947827 CAGAGGTGTCCTTAAGATCTTCCT 1947850 >seq10 Length=661985 Score = 147 bits (162), Expect = 3e-31 Identities = 124/150 (83%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || |||| ||||||||||| ||||| ||||| |||| Sbjct 486882 CGCCAAGCGACACCGCAAGATC-CTGAGAGACAACATCCAAGGTATCACAAAGCCTGCTA 486824 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | ||||| |||||||||||||| ||||||||| ||||||| || |||| ||||||| Sbjct 486823 TCAGACGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGA 486764 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 |||| |||| | |||||||||||| ||| Sbjct 486763 CCCGTGGTGTTCTCAAGATCTTCCTCGAGA 486734 Score = 129 bits (142), Expect = 9e-26 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| ||| ||| |||| ||||||||||| ||||| ||||| |||| Sbjct 410938 CGCCAAGCGACATCGCAAGAT-TCTCAGAGACAACATCCAAGGTATCACAAAGCCCGCTA 410880 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | ||||| |||||||| ||||| ||||| ||| ||||||| || |||| ||||||| Sbjct 410879 TCAGACGTCTCGCTCGTCGCGGTGGTGTCAAACGTATCTCTGGTCTGATCTACGAAGAGA 410820 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||||||||||| Sbjct 410819 CCCGGGGTGTCCTCAAGATCTTCCT 410795 >seq26 Length=140973 Score = 132 bits (146), Expect = 8e-27 Identities = 121/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||| | || |||| |||| || |||| |||||||| |||||||| |||||||| | Sbjct 41614 CGCAAAGAGACACCGCAAGATC-CTCAGAGACAACATCCAGGGAATCACAAAGCCAGCCA 41556 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| |||||||| || ||||||||| ||||||| || |||| ||||||| Sbjct 41555 TCCGCCGTCTGGCGCGTCGTGGGGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGA 41496 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 | | |||| | |||||||||||| ||| Sbjct 41495 CGAGAGGTGTTCTCAAGATCTTCCTCGAGA 41466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075136912817