Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 3e-32
seq10 147 3e-31
seq26 132 8e-27
>seq1
Length=2538488
Score = 150 bits (166), Expect = 3e-32
Identities = 120/142 (85%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||||| | |||| ||||||||||| ||||| ||||| |||||
Sbjct 804585 GCCAAGCGACACCGCAAGATCT-TGAGAGACAACATCCAAGGTATCACAAAGCCTGCTAT 804527
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||
Sbjct 804526 CCGTCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTATGAAGAGAC 804467
Query 16552 TCGTGATGTTTTGAAGATCTTC 16573
|||| ||| | |||||||||
Sbjct 804466 CCGTGGTGTCCTAAAGATCTTC 804445
Score = 118 bits (130), Expect = 2e-22
Identities = 114/144 (79%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| |||| || |||| |||||||| |||||||| ||||| || ||
Sbjct 1947708 GCCAAGCGACACCGCAAGATC-CTCAGAGACAACATCCAGGGAATCACAAAGCCGGCGAT 1947766
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || || |||||||| ||||||||| ||||||| || |||| || ||||
Sbjct 1947767 CCGTCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 1947826
Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575
| | ||| | |||||||||||
Sbjct 1947827 CAGAGGTGTCCTTAAGATCTTCCT 1947850
>seq10
Length=661985
Score = 147 bits (162), Expect = 3e-31
Identities = 124/150 (83%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| |||| || |||| ||||||||||| ||||| ||||| ||||
Sbjct 486882 CGCCAAGCGACACCGCAAGATC-CTGAGAGACAACATCCAAGGTATCACAAAGCCTGCTA 486824
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|| | ||||| |||||||||||||| ||||||||| ||||||| || |||| |||||||
Sbjct 486823 TCAGACGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGA 486764
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580
|||| |||| | |||||||||||| |||
Sbjct 486763 CCCGTGGTGTTCTCAAGATCTTCCTCGAGA 486734
Score = 129 bits (142), Expect = 9e-26
Identities = 117/145 (81%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| ||| ||| |||| ||||||||||| ||||| ||||| ||||
Sbjct 410938 CGCCAAGCGACATCGCAAGAT-TCTCAGAGACAACATCCAAGGTATCACAAAGCCCGCTA 410880
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|| | ||||| |||||||| ||||| ||||| ||| ||||||| || |||| |||||||
Sbjct 410879 TCAGACGTCTCGCTCGTCGCGGTGGTGTCAAACGTATCTCTGGTCTGATCTACGAAGAGA 410820
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
|| | ||| | |||||||||||
Sbjct 410819 CCCGGGGTGTCCTCAAGATCTTCCT 410795
>seq26
Length=140973
Score = 132 bits (146), Expect = 8e-27
Identities = 121/150 (81%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||| | || |||| |||| || |||| |||||||| |||||||| |||||||| |
Sbjct 41614 CGCAAAGAGACACCGCAAGATC-CTCAGAGACAACATCCAGGGAATCACAAAGCCAGCCA 41556
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| |||||||| |||||||| || ||||||||| ||||||| || |||| |||||||
Sbjct 41555 TCCGCCGTCTGGCGCGTCGTGGGGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGA 41496
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580
| | |||| | |||||||||||| |||
Sbjct 41495 CGAGAGGTGTTCTCAAGATCTTCCTCGAGA 41466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075136912817
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |