Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 185 2e-41 >seq5 Length=1549313 Score = 185 bits (204), Expect = 2e-41 Identities = 620/954 (65%), Gaps = 16/954 (2%) Strand=Plus/Plus Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 ||||| ||||||| || |||| ||||| || | |||| | || || ||||||| Sbjct 643960 GCAAGAGCAACCAGAAGAACCTGGGTACCATCAAATGCTCCAACTTGTGCACTGAGATTA 644019 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 | || ||| |||| ||||||||| || || || ||| | || || ||||| || || Sbjct 644020 TCGAGTACTCCGCCCCCGACGAGGTCGCGGTCTGCAACTTGGCTTCCATCGCCCTACCAA 644079 Query 364313 CGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG-CT 364371 | ||| | | |||| | | || |||| | ||| | || || || | || || Sbjct 644080 CCTTTATCACCAATGGCGAGTATAACTTCCAGAAGCTTCACGATGTTGCCAAGGTTGTCT 644139 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 | | ||||| ||||||||||||| || | ||||| |||||||||| || Sbjct 644140 GCA-GAAATCTGAACAAGGTTATCGATGTCAACTTCTATCCCGTTCCTGAAGCAAAGAAG 644198 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || ||| | || || || || || ||| | |||||||| || ||||| || | ||| ||| Sbjct 644199 TCCAATCTCCGACACCGACCCATCGGTATCGGTGTACAAGGTCTCGCCGATGCTTTCATG 644258 Query 364492 ATGCTCAAGATGGCA--TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 |||| | | || ||||| | ||| | || || ||| ||||||| | Sbjct 644259 --GCTCTTCGTTACCCCTTCGATTCTATGCAAGCTAAGGAACTCAACAAGCAGATCTTCG 644316 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | || || ||| || ||| | || ||||| || | || || |||| | Sbjct 644317 AGACTATCTATCACGCAGCACTCGAGGCATCGTGCGAGCTAGCTCAAGAAGAGGGTCCTT 644376 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 || | || || ||||| || ||| ||| ||||| || | |||| |||| ||||| | Sbjct 644377 ACCCCACCTACGAGGGATCTCCTGCATCGAAGGGAGAACTTCAGTATGATTTATGGGGAG 644436 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGT 364728 |||| || || | | ||| |||||| | |||| | | ||| | ||| |||||||| Sbjct 644437 TCACTCCTTCCGAACTCTGGGACTGGGCTTCGCTCAAGGACCAGA-TCAAGCAGCATGGT 644495 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 | |||||||| ||| | || |||||||| || || ||||| | || |||||||| Sbjct 644496 ATCCGCAACTCTCTCCTCCTCGCTCCCATGCCAACTGCCTCTACCTCGCAAATCCTCGGC 644555 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 |||||||||||| || || | || ||| | ||| | ||||| || || | || Sbjct 644556 TTCAACGAGTGCTTTGAGCCATACACGTCGAATATCTATACTCGCCGCGTGCTAGCTGGC 644615 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | | | || ||| | | | || ||| |||||| ||||| ||| | Sbjct 644616 GAGTTCCAGATTGTCAATCCTTGGTTGCTGCGAGAACTTGTCGACCGAGGGCTATGGAAT 644675 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 ||| | ||||| ||||| || | | ||||| || ||| | || || || Sbjct 644676 GACGATCTCAAGAATCTGATCATTGCTCATCAAGGTTCAGTCCAGCATATCCCTCACCTT 644735 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA---CTCTC 365025 || | ||| | ||| |||| ||||| || || ||||| || || | || | || Sbjct 644736 CCCGTTGATGTCAAGGCTATCTACAAGACAGTCTGGGAGAT---CAGCCAAAAAGCCATC 644792 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 || || ||| | || || || ||| | || || ||| || || | |||||| | Sbjct 644793 ATCGACATGTCTGCTGACCGTGGTCCGTTCATTGACCAGTCACAATCACTGAACGTACAC 644852 Query 365086 ATG-ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 || | || ||| || | ||| |||| ||||||||||| || ||||||||||| Sbjct 644853 TTGCAATC-GCCTACATTCGCACAGCTCACATCCATGCACTTTTACGGGTGGAA 644905 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 ||| ||||| ||||| | || || ||||| || || || ||||||||||| | || || Sbjct 643461 GGGTTACTCCAATGGTATCGTACCGATGCTGCGAGTTTTCAACAATACTGCGCGTTATGT 643520 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 || |||||||| ||||| || || |||||||| || ||||||| ||||| Sbjct 643521 TGATCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTACATCGAGCCATGGCATGC 643580 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGCGTGCAC 363931 ||||| ||||| || ||||| ||||| || || ||| |||||||| ||| | | || Sbjct 643581 AGATATCTTTGACTTCCTTGATCTCCGCAAGAATCAC-GGAAAAGAAGAAGTCAGAGCTA 643639 Query 363932 GTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | || || |||| ||| |||||| || | ||| Sbjct 643640 GAGACCTTTTCTTTGCTCTTTGGATTCCAGAC 643671 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| || | ||||| ||| | ||| || || | || || || ||||| || Sbjct 643192 TTCACGCATGCTTCCCCAACTCTGTTCGCTGCCGGCACACCTACCCCTCAAATGTCCTCC 643251 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||| || || |||||||| || | |||||||| |||| | Sbjct 643252 TGCTTCCTGGTCACAATGAAGGATGACTCTATCGAGGGCATTTACGACACACTCAAGACT 643311 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG 363701 || || | |||||||||||||| || || ||||| Sbjct 643312 TGCGCGATGATTTCCAAGAATGCTGGTGGTATTGG 643346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352447753958