Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 1e-14 >seq18 Length=480229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | || || | ||||| ||||| || Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| || ||||| |||||| Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| || || || | || || | | ||| | |||||||| Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || || || ||| | || || | || ||||| || Sbjct 342043 ATTCAGAAAGAGTCTACTCTCCATCTCGTCCTCCGTCTTAGAGGTGG 342089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| |||| || || | || || | || || || || ||| Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| || ||||| || |||||||| ||||| Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAA-GATAAAGAGGGCATTCCACCCGACCA 341753 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || || | ||||||| || || | |||||||| Sbjct 341754 ACAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAA 341813 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || || ||| | || || |||| |||| || Sbjct 341814 CATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGG 341861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327635598235