Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq1 91.5 1e-13 >seq18 Length=480229 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||||||||| ||||| | | Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||| ||||| ||||| ||| Sbjct 341467 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAA 341526 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || || ||||||||| || ||| |||| || || ||| Sbjct 341527 CAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAAC 341586 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | ||| | ||| | || || ||| Sbjct 341587 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGGT 341634 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | || || || || ||| | | Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || |||||||| || ||||| ||||||||||| ||| Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | || ||| || || | || ||||||||| Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAAC 341814 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | ||| | ||| | || |||| || ||| Sbjct 341815 ATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGGT 341862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || | ||||| || | || Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || || |||||||| ||| Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | ||||| | || | || ||||||||| Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 342043 ATTCAGAAAGAGTCTAC 342059 >seq1 Length=2538488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || || || || |||| ||| | ||| || |||| || || || |||| Sbjct 608126 TCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACA 608067 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 ||||||| || |||||||| ||||| || || || || || || || ||| | || || Sbjct 608066 AGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGCTCGAAGACG 608007 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || ||| ||||||| |||||||| || || || ||||| Sbjct 608006 GACGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 607967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727647034985