Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq18 150 2e-31
seq1 91.5 1e-13
>seq18
Length=480229
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || ||||| || || |||||||||| ||||| | |
Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || || || ||||||||||| ||||| ||||| |||
Sbjct 341467 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAA 341526
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| || ||||| || || ||||||||| || ||| |||| || || |||
Sbjct 341527 CAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAAC 341586
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || ||||||||| | ||| | ||| | ||| | || || |||
Sbjct 341587 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGGT 341634
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || | || || || || ||| | |
Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || |||||||| || ||||| ||||||||||| |||
Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||| | || ||| || || | || |||||||||
Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAAC 341814
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || ||| | ||| | ||| | || |||| || |||
Sbjct 341815 ATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGGT 341862
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || || | || | ||||| || | ||
Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || ||||||||||| || || |||||||| |||
Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||| | ||||| | || | || |||||||||
Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| ||||| || ||
Sbjct 342043 ATTCAGAAAGAGTCTAC 342059
>seq1
Length=2538488
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
|||| || || || || || |||| ||| | ||| || |||| || || || ||||
Sbjct 608126 TCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACA 608067
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
||||||| || |||||||| ||||| || || || || || || || ||| | || ||
Sbjct 608066 AGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGCTCGAAGACG 608007
Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| ||| ||||||| |||||||| || || || |||||
Sbjct 608006 GACGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 607967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727647034985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |