Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 116 8e-21 seq12 105 1e-17 seq1 91.5 3e-13 >seq5 Length=1549313 Score = 116 bits (128), Expect = 8e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | |||||||| ||||| ||||| || || || |||| |||| ||||||||| Sbjct 1186025 GTCCTCGGACCCAACGGTGCAGGTAAATCCACACTCGTCAAGCTCCTCGTCGGCGAGACC 1185966 Query 280233 CAG-GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 || |||| ||| | || ||||||||||||||| || || | |||||| || || Sbjct 1185965 GAGAGCCAACAAGGTGAA-GTCTGGAAGCATCCCAACTTGGTCATCGGTTACGTTGCCCA 1185907 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||||||||||||||| || |||| || |||| ||||||| | |||| | | || Sbjct 1185906 GCACGCTTTCCACCACATTGATCACCATCTCGACAAGACTCCTCTCGAATATCTGCTCTG 1185847 Query 280352 GCGCTATGCAAGTGGGCAGGATCTGGAG 280379 ||| || || || ||||||| ||| Sbjct 1185846 GCGATACCAAACCGGTGAGGATCTTGAG 1185819 Score = 107 bits (118), Expect = 4e-18 Identities = 356/546 (65%), Gaps = 16/546 (3%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 |||||| ||||| || ||||| | ||||| ||||| ||||||| |||||||| | || Sbjct 1186851 AGGTGAAGATCTTTGCAACTGTCAATTCTCTCTCGCTTATGGTGCCAAGATTCTCTTGAA 1186792 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || | ||| ||||||| ||| |||| || |||||| ||| || || | Sbjct 1186791 CACTGCTACTCTCCGACTCAAGCGAGGCCACCGCTACGGTCTCTGCGGCAGAAACGGTTC 1186732 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 || ||| || || ||| | || || ||||||||| | || || || || | | Sbjct 1186731 CGGAAAGTCTACCCTCATGAGAGCTATCCAGAACGGTCAGGTCGAGGGTTTCCCATCCCC 1186672 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583 |||||| || || | || || |||||||| ||||| || ||| | ||| Sbjct 1186671 GGATGAGGTCAGAACTTTCTACGTTGAGCACGATATCGATGGATCCGAAGAGGAGACCAC 1186612 Query 279584 TGTGTTCGACTTCCTAACGTCTGACA-ATCAGGTTATGGAAATCAGCTCTCCTGAGGAAA 279642 | || ||||| || | || ||| || || || || || | ||||||| Sbjct 1186611 CATCTTGGACTT--TATCCTC--ACAGATAAGCGAATCCAAGGCACCGAA---GAGGAAA 1186559 Query 279643 TCATCCAGAAACTGGAGGCCAATGGTTTT---GATGAAAGA-ATGCGTAATCTGCCAGTA 279698 ||| ||| ||| || || ||||| | ||| || | || | || || | Sbjct 1186558 TCAAGGAGACACTCGACTCCGTCGGTTTCACCGCTGAGCGACAAGCCCACTC---CATT- 1186503 Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || || | || |||||||| | Sbjct 1186502 GGATCGCTATCCGGTGGATGGAAGATGAAGCTTGCTCTTGCCCGTGCCATTCTTTTCAAA 1186443 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| || ||||||||||| ||||||||| |||| | ||| || ||||| Sbjct 1186442 GCCGATATCCTTCTCCTTGATGAGCCCACCAACCACTTGGATGTCCTCAATGTTACCTGG 1186383 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | |||||| ||| || | | | ||| |||| ||||| |||||||| Sbjct 1186382 TTGATCGACTACCTCACCTCCCTCACCACCTGCACATCCATCATCGTCTCGCACGACTCC 1186323 Query 279879 GGCTTC 279884 | |||| Sbjct 1186322 GACTTC 1186317 >seq12 Length=600358 Score = 105 bits (116), Expect = 1e-17 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 ||||| || ||||| ||||||| |||||||| || ||||||||||| |||||| || | Sbjct 273045 TCACGTATCGGTGTTGTTGGACCGAATGGTGCCGGCAAGTCTACCCTCATCAAACTCATC 273104 Query 280221 ACTGGCGAGACC-CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||||| ||| || ||| | || || ||||||||| || | || ||||| Sbjct 273105 ACTGGCGATACCACACCAGACTCA-GGCAAGGTAGAGAAGCATCCTAATCTACGTATGGC 273163 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 || || ||||||||||| || ||| | | | ||| |||| | |||| | ||| Sbjct 273164 CTATGTAGCTCAGCACGCATTTGGTCACCTACAAGAGCACATGGAGAAGACTGCCTGCCA 273223 Query 280340 ATACATTCAGTGGCGCTATGCAAG-TGGGCAGGATC 280374 ||||| || |||||||| |||| ||| || |||| Sbjct 273224 GTACATACAATGGCGCTA-CCAAGATGGTCATGATC 273258 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| Sbjct 511117 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAGC 511176 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 511177 CCCACGTTGGGC 511188 >seq1 Length=2538488 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| Sbjct 262306 AGCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGATTGTCGTGGGTTCGAG 262247 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 262246 CCCCACGTTGGGC 262234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835891328029