Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 179 7e-40 seq1 143 5e-29 seq5 107 4e-18 seq3 86.0 1e-11 >seq18 Length=480229 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| || || ||||||||||| || ||| Sbjct 341633 CCACCACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAG 341574 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||||| |||||||||||||| || || | |||||||||||| ||| Sbjct 341573 AGGGTTCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGA 341514 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||| |||||||| || | ||| || || Sbjct 341513 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACC 341454 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | |||||| ||||| |||||||| Sbjct 341453 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || || ||||| || || ||||| ||||| || Sbjct 341861 CCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGAT 341802 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || | || ||||||||||||||| Sbjct 341801 AGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGA 341742 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || ||||||||||| | ||||||| || ||||| || | |||||||| Sbjct 341741 ATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACC 341682 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||| || || || || || |||||||| ||||| |||||||| Sbjct 341681 TCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Score = 159 bits (176), Expect = 6e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || |||||||| || ||||| ||||| || || ||||| || || || | |||| Sbjct 342065 TGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGC 342006 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | || |||||||||||||| ||||||||||||||||| ||||| Sbjct 342005 TTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTG 341946 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||||| || |||||||| | || || ||||||||||| || || || || || Sbjct 341945 CTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTC 341886 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || |||||||| Sbjct 341885 AGCGTCTTGACAAAGATCTGCAT 341863 >seq1 Length=2538488 Score = 143 bits (158), Expect = 5e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || |||||||| || | || ||||| | ||| Sbjct 607960 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTG 608019 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || |||| |||||||||||||| ||||| |||||||| || ||||| Sbjct 608020 CTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTT 608079 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 | |||||| ||||||||||| | || || || || | ||||||||| || Sbjct 608080 GGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 >seq5 Length=1549313 Score = 107 bits (118), Expect = 4e-18 Identities = 133/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 225002 GGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATG 225061 || ||| |||| || |||| ||||| ||||||||||| |||||||| ||||| | ||| Sbjct 1185865 GGAGTCTTGTCGAGATGGTGATCAATGTGGTGGAAAGCGTGCTGGGCAACGTAACCGATG 1185924 Query 225062 CGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGTTGT--GCCTCGCCGGTGAGGA 225119 || ||||||||||||||| || | || || || | | | ||||||| ||||| Sbjct 1185925 ACCAAGTTGGGATGCTTCCAGAC--TTCACCTTGTTGGCTCTCGGTCTCGCCGACGAGGA 1185982 Query 225120 CCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179 ||||| ||| || | || || ||||| ||||| || | ||| ||| |||||||||| Sbjct 1185983 GCTTGACGAGTGTGGATTTACCTGCACCGTTGGGTCCGAGGACGGCAACACGGGATGACA 1186042 >seq3 Length=2053931 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 176166 CCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTG 176225 |||||||| | |||||| | || | | || || ||||| |||| || | ||| ||| Sbjct 64931 CCGTCATCGTTGAGGTATGTGAGGATATCGTCATCCTCCTTGCGGAAGATCTTCCGTGTG 64990 Query 176226 TTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGG 176285 ||| ||| || |||||||||||||| | || ||| ||||| || || || | | Sbjct 64991 ATGGCGGAGAGCGAGGTGAAGATATACCTGGGTGAGGCATGATCCTTTCCGCCTTGCAAG 65050 Query 176286 CGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCT 176345 || | |||||||| || || | ||| ||||||||| || ||| ||| ||| | Sbjct 65051 CGAGTGCCGAATTGACCATTGGGCATAAGGGGATTGATGTTGTTGTTACCAACGAAGTGT 65110 Query 176346 TGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATA 176395 || ||||| || || |||| || | | || ||||| |||||||| Sbjct 65111 TGCGCCATACCAACAATGGTTCCTGCCAAACTGGCTTCGCCATGGTGATA 65160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621605100680