Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 2e-16
seq16 98.7 2e-15
seq4 84.2 5e-11
>seq1
Length=2538488
Score = 102 bits (112), Expect = 2e-16
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| || ||||||||||| | || ||||| ||||||
Sbjct 607973 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAAG 608032
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| |||||||| |||||| || || || |||||||| || | || || ||
Sbjct 608033 ATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 608092
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443
|| || | ||| || || || ||||| ||||| |||||
Sbjct 608093 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133
>seq16
Length=487666
Score = 98.7 bits (108), Expect = 2e-15
Identities = 213/316 (67%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488
|| ||| |||| || ||||| || ||||| || || | ||||| || || || || |||
Sbjct 197608 TCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACACCCTTCTACCCT 197549
Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548
|| || |||||||| || ||| | ||||| || ||||| ||||||||||| |||
Sbjct 197548 CGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAAAATTACCGCGAG 197489
Query 72549 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGA-GG 72607
|| ||| ||| | | || || ||| |||||||||||| || | ||| ||
Sbjct 197488 TCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCGCCAAGAAGAGGG 197429
Query 72608 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGA 72667
| || ||||| || |||||||| ||| || || || | || | | ||||| |
Sbjct 197428 AGAACA-TTCGTCACGCGTAAAATAACGCGGGCCGTGGCCGAAATCTCGATGGGTGTTCA 197370
Query 72668 AAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTA 72727
| || | || || || || | ||||| | | || |||||| |||| | || ||
Sbjct 197369 GGATTGTCTTTACCTGGGGAACCTGGATGCGATGCGTGACTGGGGACATGCTAGAGACTA 197310
Query 72728 CGTAGAAGCAATGTGG 72743
|| |||| |||||||
Sbjct 197309 TGTTGAAGGAATGTGG 197294
>seq4
Length=1701615
Score = 84.2 bits (92), Expect = 5e-11
Identities = 141/201 (70%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 135461 AATCAAAAATACAAAGACTTCAGTTCGAAGTTTGGTGCAGAGAATGTTGGCATCATCACG 135520
|||||||||||| |||||||| || || ||||| ||||| || |||||| |||||
Sbjct 553571 AATCAAAAATACCGAGACTTCAAAGAGACATTCGGTGCTGAGAACGTCGGCATCCTCACG 553630
Query 135521 GGAGACGT--CGTCAAAAACGAAACCGCGAAACT-TCTGATTATGACCACCGAAATATTT 135577
|| || || | ||| || || | || || ||| || ||||| |||||||| ||
Sbjct 553631 GGCGATGTGCAGATAAATCCGGAAGC---AAGCTGTCTCATCATGACGACCGAAATCTTG 553687
Query 135578 CGAATTATGGTGATCAAACACGACCAGAGAATCCAAAACGTCAAGTGGGTTATTTTCGAT 135637
|| | |||| | |||| || | || | | || ||||||||||||| |||
Sbjct 553688 CGCAGTATGCTTTACAAAGGCGCTGATCTCATTAGAGATGTTGAGTGGGTTATTTTTGAT 553747
Query 135638 GAAGTTCACTATATCAATGAT 135658
||||||||||| |||| |||
Sbjct 553748 GAAGTTCACTACGTCAACGAT 553768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653357111782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |