Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 seq16 98.7 2e-15 seq4 84.2 5e-11 >seq1 Length=2538488 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || ||||||||||| | || ||||| |||||| Sbjct 607973 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAAG 608032 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| |||||||| |||||| || || || |||||||| || | || || || Sbjct 608033 ATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 608092 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || | ||| || || || ||||| ||||| ||||| Sbjct 608093 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 >seq16 Length=487666 Score = 98.7 bits (108), Expect = 2e-15 Identities = 213/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 || ||| |||| || ||||| || ||||| || || | ||||| || || || || ||| Sbjct 197608 TCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACACCCTTCTACCCT 197549 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548 || || |||||||| || ||| | ||||| || ||||| ||||||||||| ||| Sbjct 197548 CGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAAAATTACCGCGAG 197489 Query 72549 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGA-GG 72607 || ||| ||| | | || || ||| |||||||||||| || | ||| || Sbjct 197488 TCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCGCCAAGAAGAGGG 197429 Query 72608 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGA 72667 | || ||||| || |||||||| ||| || || || | || | | ||||| | Sbjct 197428 AGAACA-TTCGTCACGCGTAAAATAACGCGGGCCGTGGCCGAAATCTCGATGGGTGTTCA 197370 Query 72668 AAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTA 72727 | || | || || || || | ||||| | | || |||||| |||| | || || Sbjct 197369 GGATTGTCTTTACCTGGGGAACCTGGATGCGATGCGTGACTGGGGACATGCTAGAGACTA 197310 Query 72728 CGTAGAAGCAATGTGG 72743 || |||| ||||||| Sbjct 197309 TGTTGAAGGAATGTGG 197294 >seq4 Length=1701615 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 135461 AATCAAAAATACAAAGACTTCAGTTCGAAGTTTGGTGCAGAGAATGTTGGCATCATCACG 135520 |||||||||||| |||||||| || || ||||| ||||| || |||||| ||||| Sbjct 553571 AATCAAAAATACCGAGACTTCAAAGAGACATTCGGTGCTGAGAACGTCGGCATCCTCACG 553630 Query 135521 GGAGACGT--CGTCAAAAACGAAACCGCGAAACT-TCTGATTATGACCACCGAAATATTT 135577 || || || | ||| || || | || || ||| || ||||| |||||||| || Sbjct 553631 GGCGATGTGCAGATAAATCCGGAAGC---AAGCTGTCTCATCATGACGACCGAAATCTTG 553687 Query 135578 CGAATTATGGTGATCAAACACGACCAGAGAATCCAAAACGTCAAGTGGGTTATTTTCGAT 135637 || | |||| | |||| || | || | | || ||||||||||||| ||| Sbjct 553688 CGCAGTATGCTTTACAAAGGCGCTGATCTCATTAGAGATGTTGAGTGGGTTATTTTTGAT 553747 Query 135638 GAAGTTCACTATATCAATGAT 135658 ||||||||||| |||| ||| Sbjct 553748 GAAGTTCACTACGTCAACGAT 553768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653357111782