Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 113 1e-19 seq16 98.7 2e-15 seq4 84.2 5e-11 seq2 84.2 5e-11 >seq5 Length=1549313 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 334128 TCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC 334187 ||||| || |||| |||||| || ||||| |||| | | |||||| || ||||| Sbjct 1186624 TCGGATCCATCGATATCGTGCTCAACGTAGAAAGTTCTGACCTCATCCGGGGATGGGAAA 1186683 Query 334188 CCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGC 334247 || || | |||||||||| ||||| | ||| || || || || || | |||||| Sbjct 1186684 CCCTCGACCTGACCGTTCTGGATAGCTCTCATGAGGGTAGACTTTCCGGAACCGTTTCTG 1186743 Query 334248 CCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATT 334307 || || ||||||||||||| || ||||| || || | | |||||| ||||| Sbjct 1186744 CCGCAGAGACCGTAGCGGTGGCCTCGCTTGAGTCGGAGAGTAGCAGTGTTCAAGAGAATC 1186803 Query 334308 TTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || ||||||| || ||||| |||| ||| | || ||||| ||||| Sbjct 1186804 TTGGCACCATAAGCGAGAGAGAATTGACAGTTGCAAAGATCTTCACC 1186850 >seq16 Length=487666 Score = 98.7 bits (108), Expect = 2e-15 Identities = 213/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 || ||| |||| || ||||| || ||||| || || | ||||| || || || || ||| Sbjct 197608 TCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACACCCTTCTACCCT 197549 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 68537 || || |||||||| || ||| | ||||| || ||||| ||||||||||| ||| Sbjct 197548 CGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAAAATTACCGCGAG 197489 Query 68538 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGA-GG 68596 || ||| ||| | | || || ||| |||||||||||| || | ||| || Sbjct 197488 TCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCGCCAAGAAGAGGG 197429 Query 68597 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGA 68656 | || ||||| || |||||||| ||| || || || | || | | ||||| | Sbjct 197428 AGAACA-TTCGTCACGCGTAAAATAACGCGGGCCGTGGCCGAAATCTCGATGGGTGTTCA 197370 Query 68657 AAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTA 68716 | || | || || || || | ||||| | | || |||||| |||| | || || Sbjct 197369 GGATTGTCTTTACCTGGGGAACCTGGATGCGATGCGTGACTGGGGACATGCTAGAGACTA 197310 Query 68717 CGTAGAAGCAATGTGG 68732 || |||| ||||||| Sbjct 197309 TGTTGAAGGAATGTGG 197294 >seq4 Length=1701615 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 126166 AATCAAAAATACAAAGACTTCAGTTCGAAGTTTGGTGCAGAGAATGTTGGCATCATCACG 126225 |||||||||||| |||||||| || || ||||| ||||| || |||||| ||||| Sbjct 553571 AATCAAAAATACCGAGACTTCAAAGAGACATTCGGTGCTGAGAACGTCGGCATCCTCACG 553630 Query 126226 GGAGACGT--CGTCAAAAACGAAACCGCGAAACT-TCTGATTATGACCACCGAAATATTT 126282 || || || | ||| || || | || || ||| || ||||| |||||||| || Sbjct 553631 GGCGATGTGCAGATAAATCCGGAAGC---AAGCTGTCTCATCATGACGACCGAAATCTTG 553687 Query 126283 CGAATTATGGTGATCAAACACGACCAGAGAATCCAAAACGTCAAGTGGGTTATTTTCGAT 126342 || | |||| | |||| || | || | | || ||||||||||||| ||| Sbjct 553688 CGCAGTATGCTTTACAAAGGCGCTGATCTCATTAGAGATGTTGAGTGGGTTATTTTTGAT 553747 Query 126343 GAAGTTCACTATATCAATGAT 126363 ||||||||||| |||| ||| Sbjct 553748 GAAGTTCACTACGTCAACGAT 553768 >seq2 Length=2148610 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 243512 AAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-CTTATTGGC 243570 |||| ||||| | ||| ||||| ||| || | || | || || ||| || || || Sbjct 698885 AAGCCGTTGACATCGAGAAGGAGTTCCTTACAAAGGCCCTCCC-TGTCGGTCTCATCGGA 698943 Query 243571 ATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630 |||||| || |||||| | ||||||||||| || || |||||||| || ||||||| Sbjct 698944 ATGAACGATGTCCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTTCTCATCGCC 699003 Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 || || | ||||| | |||||| ||| || ||||||| Sbjct 699004 CTAGGCAACGAGAAGTTCTACAACGCCACCAATCCCTTTG 699043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879024985150