Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 152 6e-32 seq2 87.8 2e-12 seq3 86.0 7e-12 seq11 82.4 9e-11 >seq5 Length=1549313 Score = 152 bits (168), Expect = 6e-32 Identities = 419/641 (65%), Gaps = 22/641 (3%) Strand=Plus/Minus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||||||||| | ||||||||||||||||||||| ||| || | |||||| | ||| || Sbjct 644594 ATAGATATTCGACGTGTATGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGA 644535 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 114060 ||| || |||||||| || | ||| || ||| |||| ||| | | | | || | || Sbjct 644534 GGCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTGCGGATACCATGCTGCTTGATCTGGTC 644475 Query 114061 CTTGAGGGCGTCCCAGT--CGTAGTT---GAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 |||||| | |||||| | |||| || || |||| ||| | |||| || Sbjct 644474 CTTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGAGTGACTCC-----CCATAAATCATAC 644420 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC 114175 || || || | || || || |||||||| | || ||| || ||||| | | Sbjct 644419 TGAAGTTCTCCCTTCGATGCAGGAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGA 644360 Query 114176 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 || | ||| | |||||||| ||||||||||| || ||||| || || | || Sbjct 644359 GCTAGCTCGCACGATGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTG 644300 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 114295 | | |||| || | ||||| || | | || || || |||| |||||| Sbjct 644299 AGTTCCTTAGCTTGCATAGAATCGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGA 644240 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 114355 ||||| ||||||| || || || || |||| | ||| ||||| || ||| Sbjct 644239 CCTTGTACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAGGAACG 644180 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 ||||| || || |||||||||| | || |||||| || ||||||||| | | || Sbjct 644179 GGATAGAAGTTGACATCGATAACCTTGTTCAGATTTCTGCAGACAACCTTGGCAACATCG 644120 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCG 114472 |||||||| | | | | | | ||| ||| ||| | | | || |||||| Sbjct 644119 TGAAGCTTCTGGAAGTTATA---------CTCGCCATTGGTGATAAAGGTTGGTAGGGCG 644069 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || |||| || || || | | ||| || | | |||||| ||||| || || Sbjct 644068 ATGGAAGCCAAGTTGCAGACCGCGACCTCGTCGGGGGCGGAGTACTCGATAATCTCAGTG 644009 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 ||||| || || | || ||||| |||| |||||| || || Sbjct 644008 CACAAGTTGGAGCATTTGATGGTACCCAGGTTCTTCTGGTT 643968 >seq2 Length=2148610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || ||||| || || | |||||||| || || || || || || ||||||||||| Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | ||| || || | | ||| || || ||||||||||| ||||| ||| Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAGAAGATACCCTCTACAGCA 698620 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || ||||| | || || ||| |||||| Sbjct 698619 GCAAACGCCACGATGCGTTCACCAAAGG 698592 >seq3 Length=2053931 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 172778 GCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 172837 ||||| |||||||| ||| || | || ||||| || || ||| ||| || ||| Sbjct 66080 GCATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCATAGGTATCGCGGCCA 66139 Query 172838 ACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGC 172897 |||||||||||||| | || || | || || ||||| ||||| || || | |||||| Sbjct 66140 ACCACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCTTCTGTGAGAATGAGC 66199 Query 172898 GTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 172947 || || | | | | | ||| || |||||||| |||||||||| ||| Sbjct 66200 GTGCAATGGCGTGCATCTTTCGTGCCAGCCTTGTTGGCATCGTCCAGCTT 66249 >seq11 Length=615894 Score = 82.4 bits (90), Expect = 9e-11 Identities = 270/409 (66%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 10781 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 10840 || || | ||| || ||||| || ||||| | ||| || |||| ||| | || || Sbjct 554134 ATATTCCTATCGAAACGACCAGGTCGGAGTAAGGCACTATCGAGGACATCGACTCGATTT 554075 Query 10841 GTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAG- 10897 || | |||| || |||| ||| | | |||| | | || ||||||||||| | |||| Sbjct 554074 GTACCAGCGAGAACTACGACTTGCTCCT-TCGT-ACCGAATCCATCCATCTC-GACAAGC 554018 Query 10898 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGC----ACTGCG 10953 || ||||||| ||| |||||| || ||||| || | || | | |||| || | Sbjct 554017 AGCTGATTGAGCGTTGATTCGCGCTCGTCATT-GCCGCCAAATGAACCGCCTTTACCTCT 553959 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT-TGATTTTCACGGG 11012 | ||||| | || || || ||||| ||||||| |||| | ||| | | ||| | Sbjct 553958 TGATTTACCAATCGCATCGATCTCATCAATGAAAATGATAGATGGTGCGTTCTTCTTTGC 553899 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 || | | || | |||||| |||||| || |||||||| || ||||| || || || | Sbjct 553898 CATC-GCGAATAAATCTCGTACTCTCGAGGGTCCGACACCGACGAACATCTCAACGAATT 553840 Query 11073 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | || || |||||| ||| | || ||||| | ||| ||||| | Sbjct 553839 CTGAACCCGATACCGAGAAGAAGGGTACGCCAGCCTCTCCCGCTGTTGCTTTGGCGATCA 553780 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 11181 || || ||||| ||||| || | || || |||||| || ||||| Sbjct 553779 ATGTTTTACCCGTACCAGGAGGTCCGGAGATAATGGCACCGCGGGGGAT 553731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353084782520