Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 113 4e-20 seq1 93.3 4e-14 >seq18 Length=480229 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| |||||||| | || | || || ||||| || ||| Sbjct 342059 GTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGCTTACCA 342000 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||||||||| || ||||| || ||||| |||||||| ||| || |||| Sbjct 341999 GCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTG 341940 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | | ||||||||| | ||| | || ||||| ||||| || Sbjct 341939 ACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTCAGCGTC 341880 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 341879 TTGACAAAGATCTGCAT 341863 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || ||||| |||||||| Sbjct 341861 CCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGAT 341802 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| |||||||| ||||||||||||| || ||||| || Sbjct 341801 AGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGA 341742 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || || || || ||||| |||| || | ||| || | | || || Sbjct 341741 ATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTG-TCAATGGTATCAGAAGATTCTAC 341683 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||| || ||||| || |||||||| Sbjct 341682 CTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 >seq1 Length=2538488 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || || || ||||| |||||| Sbjct 607967 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCA 608026 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 608027 GCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 608086 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGC 127085 | | |||| |||||| | |||||| |||| ||| | || |||| Sbjct 608087 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500389880560