Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq2 87.8 2e-12 seq11 82.4 9e-11 >seq5 Length=1549313 Score = 143 bits (158), Expect = 3e-29 Identities = 417/641 (65%), Gaps = 22/641 (3%) Strand=Plus/Minus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 |||||| || | ||||||||||||||||||||| ||| || | |||||| | || || Sbjct 644594 ATAGATATTCGACGTGTATGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGA 644535 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 ||| || |||||||| || | ||| || |||||||| ||| | | | || | || Sbjct 644534 GGCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTGCGGATACCATGCTGCTTGATCTGGTC 644475 Query 116022 CTTGAGGGCGTCCCAGT--CGTAGTT---GAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 |||||| | |||||| | |||| || || ||| |||| | |||| || Sbjct 644474 CTTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGAGTGACTC-----CCCATAAATCATAC 644420 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 || || || | || || || |||||||| | || || || ||||| | | Sbjct 644419 TGAAGTTCTCCCTTCGATGCAGGAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGA 644360 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || | ||| | |||||||| ||||||||||| || ||||| || || | || Sbjct 644359 GCTAGCTCGCACGATGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTG 644300 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | | |||| || | ||||| || | | ||| || || |||| |||||| Sbjct 644299 AGTTCCTTAGCTTGCATAGAATCGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGA 644240 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 ||||| ||||||| || || || || |||| | ||| ||||| || ||| Sbjct 644239 CCTTGTACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAGGAACG 644180 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 ||||| || || |||||||||| | || |||||| || ||||||||| | | || Sbjct 644179 GGATAGAAGTTGACATCGATAACCTTGTTCAGATTTCTGCAGACAACCTTGGCAACATCG 644120 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCG 116433 |||||||| | | | | | | ||| ||| ||| | | | || |||||| Sbjct 644119 TGAAGCTTCTGGAAGTTATA---------CTCGCCATTGGTGATAAAGGTTGGTAGGGCG 644069 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || || |||| || || || | | ||| || | | |||||| ||||| || || Sbjct 644068 ATGGAAGCCAAGTTGCAGACCGCGACCTCGTCGGGGGCGGAGTACTCGATAATCTCAGTG 644009 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 ||||| || || | || ||||| |||| |||||| || || Sbjct 644008 CACAAGTTGGAGCATTTGATGGTACCCAGGTTCTTCTGGTT 643968 >seq2 Length=2148610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || ||||| || || | |||||||| || || || || || || Sbjct 698752 AGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCC 698693 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | ||| || || | | ||| ||||||||||||||||| Sbjct 698692 CGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAGAAGAT 698633 Query 127639 CCCCTCCACACACGCGAACGC 127659 ||||| ||| || ||||| Sbjct 698632 ACCCTCTACAGCAGCAAACGC 698612 >seq11 Length=615894 Score = 82.4 bits (90), Expect = 9e-11 Identities = 270/409 (66%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 12696 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 12755 || || | ||| || ||||| || ||||| | ||| || |||| ||| | || || Sbjct 554134 ATATTCCTATCGAAACGACCAGGTCGGAGTAAGGCACTATCGAGGACATCGACTCGATTT 554075 Query 12756 GTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAG- 12812 || | |||| || |||| ||| | | |||| | |||| ||||||||||| | |||| Sbjct 554074 GTACCAGCGAGAACTACGACTTGCTCCT-TCGT-ACCGAATCCATCCATCTC-GACAAGC 554018 Query 12813 AGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGC----ACTGCG 12868 || ||||||| ||| ||| || || ||||| || | || | | |||| || | Sbjct 554017 AGCTGATTGAGCGTTGATTCGCGCTCGTCATT-GCCGCCAAATGAACCGCCTTTACCTCT 553959 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGG 12927 | ||||| | || || || || |||||||||| |||| | ||| | | ||| | Sbjct 553958 TGATTTACCAATCGCATCGATCTCATCAATGAAAATGATAGATGGTGCGTTCTTCTTTGC 553899 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 || | | || | |||||| |||||| || |||||||| || |||||||| || || | Sbjct 553898 CATC-GCGAATAAATCTCGTACTCTCGAGGGTCCGACACCGACGAACATCTCAACGAATT 553840 Query 12988 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | || || |||||| ||| | || ||||| | ||| ||||| | Sbjct 553839 CTGAACCCGATACCGAGAAGAAGGGTACGCCAGCCTCTCCCGCTGTTGCTTTGGCGATCA 553780 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGAT 13096 || || ||||| || || || | || || |||||| || ||||| Sbjct 553779 ATGTTTTACCCGTACCAGGAGGTCCGGAGATAATGGCACCGCGGGGGAT 553731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506670850040