Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18 102 2e-16 seq1 98.7 2e-15 >seq18 Length=480229 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| || | |||||| || | | || | ||||||| Sbjct 341846 AGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCT 341787 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||| | ||||| ||||| || ||| || ||| || Sbjct 341786 TCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 341727 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | ||| || | | |||||| |||| || || ||| Sbjct 341726 TGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTC 341667 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 341666 TTGCCAGTCAGGGTCTTTACGAAGATCTG 341638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| ||||| || || | |||||| || | | ||||||||| || Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || || || | ||||| ||||| || || ||||| || Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || ||||| || || ||| Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 341894 TTGCCTGTCAGCGTCTTGACAAAGATCTG 341866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || || || || || ||||| |||| ||| ||||| | | || Sbjct 341627 CGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGTT 341568 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || | ||||| ||||||||||| ||||| || ||||| || ||| || Sbjct 341567 CGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCCC 341508 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | || || || || | Sbjct 341507 TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGA 341448 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || ||||| || || || Sbjct 341447 GTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTG 341410 >seq1 Length=2538488 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199423 AAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAG 199482 || ||||||||| |||||||| |||| ||||||||| | | || | ||| ||||| || Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016 Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 ||||||||| |||||||| || ||||| ||||| || || || || ||||| || Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| ||| || |||| |||||| | | || || || | ||||| ||||| Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920557759623