Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq18 102 9e-17
>seq1
Length=2538488
Score = 107 bits (118), Expect = 2e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || |||| ||||||||||| || |||||
Sbjct 607972 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAA 608031
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||| ||||||| || | || |||||||||| |||||| ||||| |
Sbjct 608032 GATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 608091
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565
| | |||||| || || || || | |||||||| ||||
Sbjct 608092 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135
>seq18
Length=480229
Score = 102 bits (112), Expect = 9e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||||| || |||||| || || ||||| || ||||| || || | || |||
Sbjct 341843 ACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCTTCG 341784
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || || || ||||| ||||| ||||||| || | || ||| || ||
Sbjct 341783 AGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 341724
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | || || ||||| || |||| || || || ||
Sbjct 341723 ATCTTGGACTTGA-CGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTCTT 341665
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || ||||| |||||
Sbjct 341664 GCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237912481880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |