Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 seq1 109 5e-19 seq18 87.8 2e-12 >seq2 Length=2148610 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 ||||||||||||||| ||| | || || || || || ||||| |||||| || ||| Sbjct 698757 AAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTC 698698 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 ||||| |||||||| ||||| || ||||||||||| |||| || ||| ||| || ||| Sbjct 698697 AAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAG 698638 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| ||||| || || || || ||||| | ||| || || || || | || ||| Sbjct 698637 AAGATACCCTCTACAGCAGCAAACGCCACGATGCGTTCACCAAAGGTAGACTCCTTGTCT 698578 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 | |||||| || ||||| ||||||||| Sbjct 698577 GAAATCCAGGTAAGAGCCCACTCGGCCTTT 698548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || ||||| || ||||| | || ||| | ||||| ||||| | | ||| ||||| Sbjct 698311 GATCTGGAAGCCATAGAAGCATCTTGCTTCGGCTACCTGTACTTCGTTTGAGAATCGCTC 698252 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 || || || ||||||||||| || ||| | || || ||||| || || ||| ||| Sbjct 698251 GAGGAGGTTCTCGTTGACGATCCCATCGGCAGAAGCAAAGAAGGCGAGGACATGCGAGAT 698192 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 || || |||| | ||||| ||| ||||||||| | |||||||| || || Sbjct 698191 AAAGTGCTTTTCGTCCTTGTTCATGCGGTTGTCCCAGTCGTGGAGATCCTTGGAGAGATC 698132 Query 133395 CACCTCCTCGACGGTCCA 133412 || ||||||| | ||||| Sbjct 698131 CATCTCCTCGGCAGTCCA 698114 >seq1 Length=2538488 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 38272 GCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAA 38331 |||| ||||||||| |||| |||||| || |||||| | | | | | || || | Sbjct 608135 GCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGA 608076 Query 38332 TCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGC 38391 ||| ||||| ||||| || || ||||||||||||| || || | ||| || || |||| Sbjct 608075 TCCAGGACAAGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGC 608016 Query 38392 TGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | || |||| || |||||| ||||||||||||||| ||||| Sbjct 608015 TCGAAGACGGACGAACCCTCTCCGACTACAACATCCAGAAGGA 607973 >seq18 Length=480229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || || ||| | || |||||| | || Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| || || || || |||||| Sbjct 341923 GACACCATTGATAATG--TCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACC 341980 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | |||| || || || |||||||| |||| | || || || |||| Sbjct 341981 AACAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACA 342040 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || || | || || ||| | || || ||| | ||||| || Sbjct 342041 ACATTCAGAAAGAGTCTACTCTCCATCTCGTCCTCCGTCTTAGAGGTGG 342089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || ||||| || || ||| | || || || | | Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | || |||||||| ||||| ||||||| Sbjct 341695 GATACCATTGACAACG-TCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 341753 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || || || ||||| || || | || || || || ||||| Sbjct 341754 ACAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAA 341813 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||| |||||| |||| || || || |||| || Sbjct 341814 CATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGG 341861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172368600960