Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7 196 4e-44 seq17 87.8 1e-11 >seq7 Length=1189413 Score = 196 bits (216), Expect = 4e-44 Identities = 717/1109 (65%), Gaps = 33/1109 (3%) Strand=Plus/Plus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || ||||| || || |||| || || ||||| || || || | || || || Sbjct 282854 TTGGTAATCGTGATCTTCTGAGACTTTCCTGTTGTACGGTCGGCAGCGTTGACGTTGAGG 282913 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | ||| || || || || |||||||| || ||||| | |||||| Sbjct 282914 ATTCCGTTGGCATCGACATCGAAGGTAACCTCGATTTGAGGAACACCTCTTGGTGCAGGT 282973 Query 517334 GGGATCCCTTCCAAA-TTAAATGTTCCC-AGATTATTATTATCTTTAGTGAATTTTCGTT 517391 ||||| || | ||| || | ||||| || || || || || || |||| Sbjct 282974 GGGATACC--CGAAAGTTCGAACTTCCCGAGGAGGTTGTTGTCCTTTGTTCTAGCACGTT 283031 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 |||||||||| | ||| || || ||| ||| || || | || || | || | | Sbjct 283032 CACCCTCGAAGACTTGAATCAATACACCAGGTTGGTTGTCGGCGTATGTGGAGAAGATTT 283091 Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 || || || ||||| |||||||||||| | || | | || | || |||||| | Sbjct 283092 CAGACTTCTTGGTAGGAACTGTTGTGTTTCTCTTGATGAGAGGAGTGAAAACACCACCGG 283151 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || | ||| || || ||||||| |||||| | |||| | || ||| |||| Sbjct 283152 CAGTCTCAATACCGAGGGATAGAGGAGCGACATCGAGGAGGAGGAGATCTTGGGTCTTTT 283211 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 | || | |||| ||||| || ||||| | ||| || || ||||| || || |||| Sbjct 283212 CGGATGTGTCACCAGTGAGAATGGCAGCTTGGACAGCGGCGCCGTATGCGACGGCCTCAT 283271 Query 517632 CAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTG 517686 | || || | | || ||| | | || || ||||| | | |||| || ||| Sbjct 283272 CGGGGTTGATGGACTTGCATG--GCTCCTTTCCGTTGAAGTAGTCGGAAACGAGCTTTTG 283329 Query 517687 TCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746 || ||| ||| |||||| || || || || | ||||| || | || || || Sbjct 283330 GATT--CTTGGGA-TACGAGTGGAACCACCGACGAGGACAATCTCGTTGACAGTAGACTT 283386 Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806 || | || || || | ||| || || || || || | | ||| || | || Sbjct 283387 GTCAATCTTCGAGTCACGGAGAACCTTCTCGACTGGGTCCATTGTGGATCTGAAGAGATC 283446 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 517864 | || ||||| |||||| ||| | || || || | || || || || || ||| Sbjct 283447 TTGGCACAGTTCCTCGAATCGAGCACGGGT--GATGGATGTGTAGAAGTCGATACCCTCG 283504 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 || | || |||| |||||| || || || | | ||| ||||| | | || ||||| Sbjct 283505 AAGAGCGAGTCAATTTCAATGGTGGTCTGTGCAGCAGAGGATAGAGTTCTCTTCGCACGC 283564 Query 517925 TCACATGCTGTCCTTAGTCTTCGTAA------GGCTTTTGCTGATTGATTCAAATCTGTT 517978 || |||||||| ||||| | || | ||| ||| | || ||| ||| | Sbjct 283565 TCGCATGCTGTTCTTAGACGTCTGAGAGCACGGGCATTTCCGGA--GAT----ATCCTTC 283618 Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 518038 || | |||| |||||| |||| | || | | || || ||||| || || ||||||||| Sbjct 283619 TTGTTCTTTCGCTTGAATTCTTGAGCAAAGAAGGTAACGAGACGGTTGTCGAAATCTTCA 283678 Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 518098 || || | | || | || | ||||| | |||| ||| | || ||||||| | | Sbjct 283679 CCACCGAGATGGGTGTCACCAGCGGTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTC 283738 Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 518158 | || | ||||| || |||||||| | ||| ||||| || || ||| | || | Sbjct 283739 AGGAGGGAGACATCGAATGTACCACCACCGAGATCGAAAATGAGGACGTTCTTCTCGCCG 283798 Query 518159 TCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 | | || || || ||||| || || | ||||| ||||| || || || || ||| Sbjct 283799 GACTCGCCCTTCTTGTCTAGACCGTAAGCGATGGCAGCGGCAGTGGGCTCGTTGATGATT 283858 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | || | ||||||||||| | || ||||| || |||||||| | || || ||| Sbjct 283859 CGGAGGACCTGGAGACCAGCAATGGTACCGGCATCCTTGGTGGCTTGACGCTGAGAGTCG 283918 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGC 518304 || || || || || ||||| | ||||| Sbjct 283919 TTGAAGTAGGCGGGGACAGTGACGACGGC 283947 >seq17 Length=484702 Score = 87.8 bits (96), Expect = 1e-11 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || ||||||||||| | ||||| ||||| |||||||| || || ||||| |||| ||| Sbjct 466569 ATTCCATTGGCATCGACTTCAAAAGTGACCTCAATTTGCGGAACACCTCTTGGAGCGGGT 466510 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | || | ||| | |||| || || ||||| || || | || |||| Sbjct 466509 GGGATACCGTTCAGTTCGAATTTACCCAAATGGTTGTTATCCTTTGTCATGGGTCTTTCA 466450 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || || | | ||| ||| ||| || ||| || || | ||| | || | | Sbjct 466449 CCTTCATAGACTTGAATAAGAACAGTAGGTTGGTTGTCGGCGGCAGTGGAGAAGATTTGT 466390 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 ||||| || || | ||||||||| |||| | || ||||||| ||| |||| Sbjct 466389 GATTTCTTGGTGGGTACGACTGTGTTTCTTCCAATGAGTTTTGTCATAACACCTCCTGTG 466330 Query 517514 GTTTCTAAACCAAGAGAAAGAGG 517536 ||||| | || || | |||||| Sbjct 466329 GTTTCAATTCCGAGTGTAAGAGG 466307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780818975992714