Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 437 1e-117 seq17 120 4e-22 seq28 114 2e-20 seq18 109 7e-19 seq5 84.2 3e-11 seq3 84.2 3e-11 >seq7 Length=1189413 Score = 437 bits (484), Expect = 1e-117 Identities = 852/1253 (68%), Gaps = 13/1253 (1%) Strand=Plus/Plus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 || |||||| ||| | || ||||| || || || |||||| | || || || || || Sbjct 282775 CTCTTCATCCTCAGCCTTGTACTTCTCGGCCTCGGAGACCATTCTCTCGATATCGTCCTT 282834 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 || || | ||||| || || |||||||| ||||| | || || || | | || Sbjct 282835 GGACAAGCGGCCCTTGTCGTTGGTAATCGTGATCTTCTGAGACTTTCCTGTTGTACGGTC 282894 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 |||| | || || | || || || ||||| |||||||| | || | ||||| || Sbjct 282895 GGCAGCGTTGACGTTGAGGATTCCGTTGGCATCGACATCGAAGGTAACCTCGATTTGAGG 282954 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| || ||||| | ||| ||||||| | || || | || || | |||| || Sbjct 282955 AACACCTCTTGGTGCAGGTGGGATACCCGAAAGTTCGAACTTCCCGAGGAGGTTGTTGTC 283014 Query 6805 CGTCGCCTTCTT--ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT 6862 | | | |||| ||||||||| || |||||| ||| || ||||||| || || Sbjct 283015 CTTTG--TTCTAGCACGTTCACCCTCGAAGACTTGAATCAATACACCAGGTTGGTTGTCG 283072 Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 || |||||||||| ||||| | |||| || || |||||| || | Sbjct 283073 GCGTATGTGGAGAAGATTTCAGACTTCTTGGTAGGAACTGTTGTGTTTCTCTTGATGAGA 283132 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 || || | || |||||| ||| || | || || || ||||| | || || | ||| Sbjct 283133 GGAGTGAAAACACCACCGGCAGTCTCAATACCGAGGGATAGAGGAGCGACATCGAGGAGG 283192 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | || ||||| |||| ||||| || | ||||| |||||||| | || Sbjct 283193 AGGAGATCTTGGGTCTTTTCGGATGTGTCACCAGTGAGAATGGCAGCTTGGACAGCGGCG 283252 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||||||||| |||||||||||||| || | || | || || ||||| || || Sbjct 283253 CCGTATGCGACGGCCTCATCGGGGTTGATGGACTTGCATGGCTCCTTTCCGTTGAAGTAG 283312 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | | | ||| ||| | ||||| || || || |||||||| | || || || Sbjct 283313 TCGGAAACGAGCTTTTGGATTCTTGGGATACGAGTGGAACCACCGACGAGGACAATCTCG 283372 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 || || | || || || ||||| ||||| || || || ||||| || ||||| Sbjct 283373 TTGACAGTAGACTTGTCAATCTTCGAGTCACGGAGAACCTTCTCGACTGGGTCCATTGTG 283432 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 | ||| | || ||||||||||| || || |||||||| |||||||| ||||| Sbjct 283433 GATCTGAAGAGATCTTGGCACAGTTCCTCGAATCGAGCACGGGTGATGGATGTGTAGAAG 283492 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || ||| | | ||| |||||||||||||| || ||||| | || |||| ||| Sbjct 283493 TCGATACCCTCGAAGAGCGAGTCAATTTCAATGGTGGTCTGTGCAGCAGAGGATAGAGTT 283552 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | ||| || ||||| || || |||| || ||| | || ||||| | || ||||| ||| Sbjct 283553 CTCTTCGCACGCTCGCATGCTGTTCTTAGACGTCTGAGAGCACGGGCATTTCCGGAGATA 283612 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || ||||| | || || || || |||| || ||||| || || ||| | ||| Sbjct 283613 TCCTTCTTGTTCTTTCGCTTGAATTCTTGAGCAAAGAAG-GT--AACGAGACGGTTGTCG 283669 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 |||||||||||||| | || || || || ||||| || |||||||| |||||||| || Sbjct 283670 AAATCTTCACCACCGAGATGGGTGTCACCAGCGGTAGCCTTGACTTCGAAGATACCCTCT 283729 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || ||||| || ||||||||||| || || |||||||| |||||| Sbjct 283730 TCAATGGTCAGGAGGGAGACATCGAATGTACCACCACCGAGATCGAAAATGAGGACGTTC 283789 Query 7580 GTATCGTCG---TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| || || ||||| || |||||||| ||||| || || || || || || Sbjct 283790 TTCTCGCCGGACTCGCCCTTCTTGTCTAGACCGTAAGCGATGGCAGCGGCAGTGGGCTCG 283849 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || | || |||||||| || | ||||| || || ||||| || Sbjct 283850 TTGATGATTCGGAGGACCTGGAGACCAGCAATGGTACCGGCATCCTTGGTGGCTTGACGC 283909 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| || | ||||| | ||||| Sbjct 283910 TGAGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCTTGTGTGACGCTGCCGCCGAGG 283969 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | | ||| || | ||| |||| ||| || ||||| | || ||||| || Sbjct 283970 AAGGCTTCAGCAGTCTCTCTCATCTTGAGGAGGACCATGGCGGAGATCTCCTC 284022 Score = 143 bits (158), Expect = 3e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||||| ||||||||||||||| ||||| || || ||||| | ||||||||||| Sbjct 284208 AACTTTCGTCCGATAAGACGCTTGGCATCGAAGACGGTGTTGTGTGGGTTCATGGCGACC 284267 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || || || || || || | | | || || |||| || || Sbjct 284268 TGGTTCTTGGCGGCATCACCAATGAGTCGCTCCGTGTCT---GTGAAGCCGACATATGAA 284324 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || |||| || || |||||||| || || || || || ||||| ||||||||||| Sbjct 284325 GGAGTTGTTCTGTTTCCCTGGTCGTTGGCGATGATCTCGACACGGTCATTTTGCCAGACA 284384 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTG 8147 |||||||| || || || || |||| ||| | ||||| || Sbjct 284385 CCGACGCAAGAGTAGGTGGTACCTAGATCGACACCGACTG 284424 >seq17 Length=484702 Score = 120 bits (132), Expect = 4e-22 Identities = 360/552 (65%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTA 6670 || || || |||| || | ||| ||||| ||||| ||||| || || ||| || Sbjct 466662 TCGATCTCGTCTTGGGAGAGTCTGCCCTTTTCATTGGTAATGGTGATAGATTCACTCTTT 466603 Query 6671 CCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTT 6730 || | ||||| || | || || |||| || ||||| ||||| || || || | Sbjct 466602 CCAGTAGCCTTGTCGGCTGCTGCAACCTTCATGATTCCATTGGCATCGACTTCAAAAGTG 466543 Query 6731 ACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCA 6790 || | |||||| || ||| || || |||| ||| ||||| | | || ||| |||| Sbjct 466542 ACCTCAATTTGCGGAACACCTCTTGGAGCGGGTGGGATACCGTTCAGTTCGAATTTACCC 466483 Query 6791 AGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCA 6850 | |||||||| | | | | | ||||||||||||||||| ||| || | | Sbjct 466482 AAATGGTTGTTATCCTTTGTCATGGGTCTTTCACCTTCATAGACTTGAATAAGAACAGTA 466423 Query 6851 GGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTC-GTATT 6909 ||||| || || || || |||||||||||| |||||| | ||| || | || || Sbjct 466422 GGTTGGTTGTCGGCGGCAGTGGAGAAGATTTGTGATTTCTT-GGTGGGTACGACTGTGTT 466364 Query 6910 TCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGT 6969 ||| ||| | ||||||| ||| || | ||||| | ||| || | ||||| Sbjct 466363 TCTTCCAATGAGTTTTGTCATAACACCTCCTGTGGTTTCAATTCCGAGTGTAAGAGGGCA 466304 Query 6970 CACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGC 7029 ||||| | ||| | || || | | || | | |||| || | || || | | Sbjct 466303 AACGTCGATGAGGACCATTTCCTTCA---ATCC---CTCTTCTCCAGCTAGAATACCACC 466250 Query 7030 TTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTT 7089 ||| || | || ||||| ||||| |||||||||||||| || |||| || ||| || Sbjct 466249 TTGTACGGCGGCACCGTAAGCGACGGCCTCATCGGGGTTGATACCTTTAGCCAATTCCTT 466190 Query 7090 ACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGAC 7149 || || || || || | || |||| || || || || || || |||||||| Sbjct 466189 GCCACCGAAGTACTCTTGTAGGAGCTGCTGAACCTTGGGAATACGGGTAGAACCACCGAC 466130 Query 7150 CAAAACGATTTC 7161 | |||||| || Sbjct 466129 GAGAACGATATC 466118 >seq28 Length=103271 Score = 114 bits (126), Expect = 2e-20 Identities = 228/332 (69%), Gaps = 13/332 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||| | || || || |||| || Sbjct 60666 ATCGAAATCTTCTCCTCCCAAGTGGGTGTCACCGTTGGTGGACTTTACCTCGAAGACTCC 60607 Query 7516 TCCTTCAATGTTT-AACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAAT---G 7570 ||| | ||| || || | | ||||| || ||||||||||| || ||| | | | Sbjct 60606 --CTTGGACATTTCAAGAATGGAGACATCGAAGGTACCACCACCGAGATCATAGACAGCG 60549 Query 7571 AGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | || ||| || || |||||| ||||| ||||| || | ||| || || || Sbjct 60548 ATAAC--TCGGTTC----TCAGAGTTCTTCTCGAGGCCGTAAGCTAGAGCAGCGGCTGTA 60495 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || |||| ||| | || || || ||||| || | ||||| || || || Sbjct 60494 GGCTCGTTGATAACACGTCGGACGTCTAGACCGGCAATGGTACCGGCATCCTTGGTAGCC 60435 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 ||||||||||| || || |||||||| ||||| || | ||| |||| | |||| || Sbjct 60434 TGTCGTTGCGAGTCATTGAAGTAGGCAGGGACGGTAATGACGGCGTGCTTGACCTTTCGG 60375 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTT 7782 ||||| || ||| ||| | ||| |||| || Sbjct 60374 CCGAGGTAGCCTTCAGCGGTCTCTCTCATCTT 60343 >seq18 Length=480229 Score = 109 bits (120), Expect = 7e-19 Identities = 211/313 (67%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || || || || || || || ||||| |||| ||| Sbjct 397426 TCGAAATCCTCACCACCGAGATGGGTGTCACCGGCAGTAGCCTTGACGGTGAAGACACCA 397367 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||| | || | || ||||| || ||||||||||| || || |||||||| ||| Sbjct 397366 CCGTTGATGGTCAAGAGGGAGACATCGAAAGTACCACCACCGAGATCGAAAATGAGAACG 397307 Query 7577 ---------TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 ||| | || | ||| ||| || |||||||| || || || || || Sbjct 397306 GTGCGCTCCTTCTTGTCCTTGTCGTTGGCAGAGTCTAGACCGTAGGCAATGGCGGCAGCG 397247 Query 7628 GTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 || || || || || || || ||| | || ||||| || || | ||||| || || Sbjct 397246 GTGGGCTCGTTGATGATTCGGAGAACATCGAGACCAGCGATTGTACCAGCATCCTTGGTG 397187 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 | || || || ||||| ||||| || ||||| || ||||| || | | |||| || Sbjct 397186 GACAAACGCTGAGAGTCGTTGAAGTAAGCTGGGACGGTAACGACAGCCTTCTTGACGGTC 397127 Query 7748 TTACCGAGATACG 7760 || |||| |||| Sbjct 397126 TTGCCGATCTACG 397114 >seq5 Length=1549313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACACTCTTTTAC 105881 |||||||| | ||||||||| ||||| ||| | | || |||||| | |||| | Sbjct 643359 GTGAACGTTAAGCCCAATACCACCAGCATTCTTGGAAATCAT-CGCGCA-AGTCTTG-AG 643303 Query 105882 TGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACAT 105941 ||| |||||||| || |||||| || ||||| | | | |||||| || || ||||| Sbjct 643302 TGTGTCGTAAATGCCCTCGATAGAGTCATCCTTCATTGTGACCAGGAAGCAGGAGGACAT 643243 Query 105942 TTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 ||| || | ||||| || ||| |||||||||||| | ||||| |||| Sbjct 643242 TTGAGGGGTAGGTGTGCCGGCAGCGAACAGAGTTGGGGAAGCATGCGTGAA 643192 >seq3 Length=2053931 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 184154 CCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAAGTTGTTTTACACTCGCG 184213 || ||||||||||| |||| | |||| ||| || || | ||| || || || Sbjct 66023 CCTAAAATCTTTTTCAGATGCGCTATTTCCTGGTTCTCTGTCAATTGCTTGCCAACGGCA 66082 Query 184214 TCACGCACGTTCT-TACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAAC 184272 || || || || || ||| || || ||||| ||||| || || ||| || ||||| Sbjct 66083 TCTCGGACATTGAGTAGCTTT-CCTCTTAGCGGGAAAACGCCATAGGTATCGCGGCCAAC 66141 Query 184273 AACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGT 184332 || |||||||| | ||| |||| |||||| || || |||||||| || | ||| || || Sbjct 66142 CACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCTTCTGTGAGAATGAGCGT 66201 Query 184333 ACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTT 184380 || | | | | | | || || || || ||||||||||| || || Sbjct 66202 GCAATGGCGTGCATCTTTCGTGCCAGCCTTGTTGGCATCGTCCAGCTT 66249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132252197960