Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq2 102 1e-16 seq3 86.0 8e-12 seq16 84.2 3e-11 >seq5 Length=1549313 Score = 143 bits (158), Expect = 3e-29 Identities = 562/873 (64%), Gaps = 28/873 (3%) Strand=Plus/Plus Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 || || ||||| ||| | || |||| | ||| || |||| ||||| ||| || Sbjct 644112 AAGCTTCACGATGTTGCCAAGGTTGTCTGCAGAAATCTGAACAAGGTTATCGATGTCAAC 644171 Query 112566 TTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 || || |||||| || || || ||| | ||||||| || || ||| ||||| Sbjct 644172 TTCTATCCCGTTCCTGAAGCAAAGAAGTCCAATCTCCGACACCGACCCATCGGTATCGGT 644231 Query 112626 GTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCG 112685 || ||||||||||| |||| ||||| | ||| || | || ||||| |||| Sbjct 644232 GTACAAGGTCTCGCCGATGCTTTCATGGCTCTTCGTTACCCCTTCGATTCTATGCAAGCT 644291 Query 112686 AAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG 112745 |||||| |||| || || || ||||| || |||||||| || || ||||| | Sbjct 644292 AAGGAACTCAACAAGCAGATCTTCGAGACTATCTATCACGCAGCACTCGAGGCATCGTGC 644351 Query 112746 GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG 112805 ||| | || | | || ||||| || |||| ||||| ||||| || || | || Sbjct 644352 GAGCTAGCTCAAGAAGAGGGTCCTTACCCCACCTACGAGGGATCTCCTGCATCGAAGGGA 644411 Query 112806 GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCT 112864 | ||||| | |||| | |||| | || | || | | || ||||||| | || Sbjct 644412 GAACTTCAGTATGATTTATGGGGA-GTCACTCCTTCCGAACTCTGGGACTGGGCTTCGCT 644470 Query 112865 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAAC 112924 |||||| | |||||| || | ||| | || ||| ||| | | || || |||||||| Sbjct 644471 CAAGGACCAGATCAAGCAGCATGGTATCCGCAACTCTCTCCTCCTCGCTCCCATGCCAAC 644530 Query 112925 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACAT 112984 ||||| ||| | |||||| | || || || |||||||| || |||||| |||| || Sbjct 644531 TGCCTCTACCTCGCAAATCCTCGGCTTCAACGAGTGCTTTGAGCCATACACGTCGAATAT 644590 Query 112985 CTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGA 113044 |||| | | || || || ||||| |||||||| ||| | ||| || Sbjct 644591 CTATACTCGCCGCGTGCTAGCTGGCGAGTTCCAGATTGTCA------ATC-CTTGGTTG- 644642 Query 113045 CCTCAAAGAGATTG--GTCTCTGGTCCAAGGATATGAAGGATCTCA------TGGTGAAA 113096 || ||| ||| | | || | | ||| ||| | ||||||| || | | Sbjct 644643 -CTGCGAGAACTTGTCGACCGAGGGCTATGGA-ATG-ACGATCTCAAGAATCTGATCATT 644699 Query 113097 GCGGGT---GGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTAC 113153 || | ||||| | || |||| | |||| | ||| | ||| | ||| Sbjct 644700 GCTCATCAAGGTTCAGTCCAGCATATCCCTCACCTTCCCGTTGATGTCAAGGCTATCTAC 644759 Query 113154 CGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC 113213 ||||| ||||| |||| || | |||| |||||| | || || ||||||| Sbjct 644760 AAGACAGTCTGGGAGATCAGCCAAAAAGCCATCATCGACATGTCTGCTGACCGTGGTCCG 644819 Query 113214 TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 |||||||| | ||||| | | |||| || | || || || || | | ||| Sbjct 644820 TTCATTGACC--AGTCACAATCACTGAACGTACACTTGCAATCGCCTACATTCGCACAGC 644877 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCC 113331 || | || |||||| | ||| | ||||||||||| | |||||||| ||||| || |||| Sbjct 644878 TCACATCCATGCACTTTTACGGGTGGAAGAAGGGATTGAAAACGGGAATGTACTATCTCC 644937 Query 113332 GATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364 || | ||||| | | || | |||||||||| Sbjct 644938 GAACCAAGGCTGCTGTGGGCGCGATTCAGTTCA 644970 >seq2 Length=2148610 Score = 102 bits (112), Expect = 1e-16 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 102129 AAAGCGGATTGGGCTATGAAGTGG-TTTGATACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185 || || || |||||| | | ||| ||| | |||| |||| | |||||| ||| || Sbjct 698549 AAGGCCGAGTGGGCTCTTACCTGGATTTCAGACAAGGAGTC---TACCTTTGGTGAACGC 698605 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTA 102244 || | || ||||| ||| |||||||||||||||||||| | ||| ||| | || | Sbjct 698606 ATCGTGGCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCT-CTTTTGCTTCCATCTT 698664 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||||||||||||| ||||||||||| || | || ||||||||||| ||||| | Sbjct 698665 TTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATCTCGAG 698724 Query 102305 TGACGAGGGACTCCA 102319 || || || || || Sbjct 698725 AGATGAAGGTCTACA 698739 >seq3 Length=2053931 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 176834 CCCAAGATCTTCTTGAGAT-CGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGC 176892 || || ||||| || |||| || | | || ||||| ||| | || || || ||| Sbjct 66023 CCTAAAATCTTTTTCAGATGCGCT-ATTTCCTGGTTCTCTGTCAATTGCTTGCCAACGGC 66081 Query 176893 ATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAAC 176952 ||| || ||||| ||| || | || ||||| || || ||| |||||| ||||| Sbjct 66082 ATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCATAGGTATCGCGGCCAAC 66141 Query 176953 CACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGT 177012 |||||| ||||||| || || | ||||| || || ||||| ||||| | ||||| || Sbjct 66142 CACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCTTCTGTGAGAATGAGCGT 66201 Query 177013 ACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 || | || | | | ||| || |||||||| ||||| |||| Sbjct 66202 GCAATGGCGTGCATCTTTCGTGCCAGCCTTGTTGGCATCGTCCA 66245 >seq16 Length=487666 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 13612 CATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAGACACCCTTCTACC 13671 |||| ||| ||| || || || |||| || |||| ||| ||||||||||||||| Sbjct 197610 CATCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACACCCTTCTACC 197551 Query 13672 CACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTAAAGAATTACCGCG 13731 | ||||| |||||| || | ||| | || | ||| | || || |||||||||| Sbjct 197550 CTCGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAAAATTACCGCG 197491 Query 13732 AGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAG 13791 ||||||| || || |||| ||||| || ||||| || ||||| || ||| ||| Sbjct 197490 AGTCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCGCCAAGAAGAG 197431 Query 13792 G 13792 | Sbjct 197430 G 197430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741864609680