Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 109 6e-19 seq5 107 2e-18 seq2 89.7 6e-13 >seq11 Length=615894 Score = 109 bits (120), Expect = 6e-19 Identities = 281/419 (67%), Gaps = 13/419 (3%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| || | |||||||||||| || ||||||| ||| ||| || | |||||| || || Sbjct 554135 AATATTCCTATCGAAACGACCAGGTCGGAGTAAGGCACTATCGAGGACATCGACTCGATT 554076 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT-GT--CGAAACCGTCCATTTCTGTGAG 11612 |||| | || | ||||| | | ||| || || |||| || ||||| || || Sbjct 554075 TGTACCAGCGAGAACTAC---GACTTGCTCCTTCGTACCGAATCCATCCATCTCGACAAG 554019 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCC--GAACGC 11670 ||||| |||| ||| ||| ||||| || || | | || | | | ||| | | | Sbjct 554018 CAGCTGATTGAGCGTTGATTCGCGCTCGTCATT-GCCGCCAAATGAACCGCCTTTACCTC 553960 Query 11671 TT--CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 || ||||| | || || |||||||| ||||| | |||| | ||| ||| || Sbjct 553959 TTGATTTACCAATCGCATCGATCTCATCAATGAAAATGATAGATGGTGCGTTCTTCTTTG 553900 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 || |||| | || ||||| | | | ||| ||||| ||||||||||||||||| | Sbjct 553899 CCATCGCGAATAAATCTCGTACTCTCGAGGGTCCGACACCGACGAACATCTCAACGAATT 553840 Query 11789 TTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || | | | || || | |||||| || || ||| || || | ||| |||| Sbjct 553839 CTGAACCCG-ATACCGAGAAGAAGGGTACGCCAGCCTCTCCCGCTGTTGCTTTGGCGATC 553781 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || |||||||||||||| | || | || || ||| || |||||||| || || || Sbjct 553780 AATGTTTTACCCGTACCAGGAGGTCCGGAGATAATGGCACCGCGGGGGATTTTCGCGCC 553722 >seq5 Length=1549313 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 ||||| | || ||||| ||||| |||||||| | || |||||| |||| | ||| Sbjct 644947 GCCTTGGTTCGGAGATAGTACATTCCCGTTTTCAATCCCTTCTTCCACCCGTAAAAGTGC 644888 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || || | ||| | | | ||| || | || | ||||| || || ||||| Sbjct 644887 ATGGATGTGAGCTGTGCGAATGTAGGCGATTGCAAGTGTACGTTCAGTGATTGTGACTGG 644828 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 || ||||| ||||||| ||||| | |||||||||||| |||||||| || |||||| Sbjct 644827 TCAATGAACGGACCACGGTCAGCAGACATGTCGATGATGGCTTTTTGGCTGATCTCCCAG 644768 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 || |||||||| | | ||||| |||| |||||| || Sbjct 644767 ACTGTCTTGTAGATAGCCTTGACATCAACGGGAAGGT 644731 >seq2 Length=2148610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCC 119554 ||||| || ||| || |||||||| | ||||||||||| || || | ||| || Sbjct 698751 GCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCC 698692 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||||||||||| | |||| ||||| |||||||| Sbjct 698691 -GGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAGAAGAT 698633 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC-GAA- 119671 ||||| ||| || || || | | || ||| | |||||| || |||||| ||| Sbjct 698632 ACCCTCTACAGCAGCAAACGCCACGATGCGTTCA-CCAAAGGTAGACTCCTTGTCTGAAA 698574 Query 119672 -CCACTTGAGAGCCCAGTTGGCCTTACG 119698 ||| | |||||||| | |||||| || Sbjct 698573 TCCAGGTAAGAGCCCACTCGGCCTTTCG 698546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975492008200