Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 3e-30
seq16 86.0 7e-12
seq2 82.4 9e-11
>seq5
Length=1549313
Score = 147 bits (162), Expect = 3e-30
Identities = 662/1033 (64%), Gaps = 42/1033 (4%)
Strand=Plus/Minus
Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617
|||||||||| | || | | ||||| | ||||||||||||||| || || || | ||
Sbjct 644970 TGAACTGAATCGCGCCCACAGCAGCCTTGGTTCGGAGATAGTACATTCCCGTTTTCAATC 644911
Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677
| | |||||| |||| | ||||| || | ||||| | | || || || || |
Sbjct 644910 CCTTCTTCCACCCGTAAAAGTGCATGGATGTGAGCTGTGCGAATGTAGGCGATTGCAAGT 644851
Query 105678 AAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGA 105737
| |||| ||| |||||||||||| ||||||| | || | ||| || ||||
Sbjct 644850 GTACGTTCAGTGATTGTGACTGGTCAATGAACGGACCACGGTCAGCAGACATGTCGATGA 644791
Query 105738 CATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATAT 105797
| || |||| ||||| ||||| ||||| | ||||| |||| | || | |
Sbjct 644790 TGGCTTTTTGGCTGATCTCCCAGACTGTCTTGTAGATAGCCTTGACATCAACGGGAAGGT 644731
Query 105798 CTGAGATATTTTGAATTGAACCCCCC---GCCTTGACCA------TGAGATCCTTCATAT 105848
| ||||| || | |||||| || ||| || ||||||| | ||| |
Sbjct 644730 GAGGGATATGCTGGACTGAACCTTGATGAGCAATGATCAGATTCTTGAGATCGT-CAT-T 644673
Query 105849 CCTTGGACCAAAGACCA-ATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACA 105907
|| | | || | | | | |||| | | || | | ||| ||||||||
Sbjct 644672 CCATAGCCCTCGGTCGACAAGTTCTCGC-AGCAACCAAG-GAT------TGACAATCTGG 644621
Query 105908 AACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCA 105967
||||| || || || | | |||||| |||| |||||| || |||||||| ||
Sbjct 644620 AACTCGCCAGCTAGCACGCGGCGAGTATAGATATTCGACGTGTATGGCTCAAAGCACTCG 644561
Query 105968 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 106027
|| || | |||||| | ||| ||||| |||||||| || || | | ||| |||
Sbjct 644560 TTGAAGCCGAGGATTTGCGAGGTAGAGGCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTG 644501
Query 106028 CGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGT-TGAGCTTGGT 106086
|| | ||| | | |||||| | |||||||| | ||||||| || | | ||
Sbjct 644500 CGGATACCATGCTGCTTGATCTGGTCCTTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGA 644441
Query 106087 TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGT 106146
| || | |||| | |||| | ||||| | || | || | ||||| ||||| | ||
Sbjct 644440 GTGAC-TCCCCATAAATCATACTGAAGTTCTCCCTTCGATGCAGGAGATCCCTCGTAGGT 644382
Query 106147 CTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACAT 106206
|| | ||| | ||| ||| | || || ||||| || | ||||||||| ||
Sbjct 644381 GGGGTAAGGACCCTCTTCTTGAGCTAGCTCGCACGATGCCTCGAGTGCTGCGTGATAGAT 644322
Query 106207 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT-CATCTGAATCAAATGCGTAGCGGC 106265
|| || ||||| | || | ||||| |||| ||| ||||| || | ||| ||
Sbjct 644321 AGTCTCGAAGATCTGCTTGTTGAGTTCCTTAGCTTGCATA-GAATCGAAGGGGTAACGAA 644263
Query 106266 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 106325
|| || |||| ||||||||||| ||||| | ||| || |||| |||||| | ||
Sbjct 644262 GAGCCATGAAAGCATCGGCGAGACCTTGTACACCGATACCGATGGGTCGGTGTCGGAGAT 644203
Query 106326 TAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 106382
| |||| || || ||| ||||||||| || || || || || ||| ||||
Sbjct 644202 TGGACTTCTTTGCTTCAG---GAACGGGATAGAAGTTGACATCGATAACCTTGTTCAGAT 644146
Query 106383 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTT 106442
|| || |||| ||| | | || ||||| || | |||| | |||
Sbjct 644145 TTCTGCAGACAACCTTGGCAACATCGTGAAGCTTCT-------GGAAGT--TATACTCGC 644095
Query 106443 CAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 106499
||| ||| | | |||| |||||||| || ||||| ||||| || || ||| ||
Sbjct 644094 CATTGGTGATAAAGGTTGGTAGGGCGATGGAAGCCAAGTTGCAGACCGCGACCTCGTCGG 644035
Query 106500 TATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCT 106559
| | |||||| | ||| || || ||||||||||| | || || || |||| ||||
Sbjct 644034 GGGCGGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCATTTGATGGTACCCAGGTTCT 643975
Query 106560 TTTGGTTACTCTT 106572
| ||||| |||||
Sbjct 643974 TCTGGTTGCTCTT 643962
>seq16
Length=487666
Score = 86.0 bits (94), Expect = 7e-12
Identities = 190/285 (67%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6951 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7010
|| |||| ||| |||||||||||||||| ||||| |||||| || | ||| |
Sbjct 197578 CCGCAAAGCGAAAAGACACCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATAC 197519
Query 7011 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7070
|| | ||| | ||||||||||||||||||||||| || || || | |||||
Sbjct 197518 GCCTACTGGATAGTCAAAAATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATT 197459
Query 7071 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAG 7130
|| ||||| || ||||| || ||| |||| | || ||||| || || || |
Sbjct 197458 CTTTTCAATCACGAATCGCCAAGAAGAGGGAGAACATTCGTCACGCGTAAAATAACGCGG 197399
Query 7131 GGTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCG 7190
| | ||||| || ||||| |||| | || | |||| ||| | | |||
Sbjct 197398 GCCGTGGCCGAAATCTCGATGGGTGTTCAGGATTGTCTTTACCTGGGGAACCTGGATGCG 197339
Query 7191 GAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGG 7235
| | || ||||| || || | ||||||||||||| ||||||
Sbjct 197338 ATGCGTGACTGGGGACATGCTAGAGACTATGTTGAAGGAATGTGG 197294
>seq2
Length=2148610
Score = 82.4 bits (90), Expect = 9e-11
Identities = 97/129 (75%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
|| ||||| ||||||| || || || || || || || | ||| |||||||||||
Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680
Query 117346 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | |||| | || | ||| || || || ||||||||||||||||| |||
Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAA-GAGCCAGAGAAGAAGATACCCTCTACAGC 698621
Query 117405 CGCAAACGC 117413
||||||||
Sbjct 698620 AGCAAACGC 698612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980291141560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |