Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 147 3e-30 seq16 86.0 7e-12 seq2 82.4 9e-11 >seq5 Length=1549313 Score = 147 bits (162), Expect = 3e-30 Identities = 662/1033 (64%), Gaps = 42/1033 (4%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||||||||| | || | | ||||| | ||||||||||||||| || || || | || Sbjct 644970 TGAACTGAATCGCGCCCACAGCAGCCTTGGTTCGGAGATAGTACATTCCCGTTTTCAATC 644911 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | | |||||| |||| | ||||| || | ||||| | | || || || || | Sbjct 644910 CCTTCTTCCACCCGTAAAAGTGCATGGATGTGAGCTGTGCGAATGTAGGCGATTGCAAGT 644851 Query 105678 AAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGA 105737 | |||| ||| |||||||||||| ||||||| | || | ||| || |||| Sbjct 644850 GTACGTTCAGTGATTGTGACTGGTCAATGAACGGACCACGGTCAGCAGACATGTCGATGA 644791 Query 105738 CATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATAT 105797 | || |||| ||||| ||||| ||||| | ||||| |||| | || | | Sbjct 644790 TGGCTTTTTGGCTGATCTCCCAGACTGTCTTGTAGATAGCCTTGACATCAACGGGAAGGT 644731 Query 105798 CTGAGATATTTTGAATTGAACCCCCC---GCCTTGACCA------TGAGATCCTTCATAT 105848 | ||||| || | |||||| || ||| || ||||||| | ||| | Sbjct 644730 GAGGGATATGCTGGACTGAACCTTGATGAGCAATGATCAGATTCTTGAGATCGT-CAT-T 644673 Query 105849 CCTTGGACCAAAGACCA-ATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACA 105907 || | | || | | | | |||| | | || | | ||| |||||||| Sbjct 644672 CCATAGCCCTCGGTCGACAAGTTCTCGC-AGCAACCAAG-GAT------TGACAATCTGG 644621 Query 105908 AACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCA 105967 ||||| || || || | | |||||| |||| |||||| || |||||||| || Sbjct 644620 AACTCGCCAGCTAGCACGCGGCGAGTATAGATATTCGACGTGTATGGCTCAAAGCACTCG 644561 Query 105968 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 106027 || || | |||||| | ||| ||||| |||||||| || || | | ||| ||| Sbjct 644560 TTGAAGCCGAGGATTTGCGAGGTAGAGGCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTG 644501 Query 106028 CGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGT-TGAGCTTGGT 106086 || | ||| | | |||||| | |||||||| | ||||||| || | | || Sbjct 644500 CGGATACCATGCTGCTTGATCTGGTCCTTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGA 644441 Query 106087 TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGT 106146 | || | |||| | |||| | ||||| | || | || | ||||| ||||| | || Sbjct 644440 GTGAC-TCCCCATAAATCATACTGAAGTTCTCCCTTCGATGCAGGAGATCCCTCGTAGGT 644382 Query 106147 CTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACAT 106206 || | ||| | ||| ||| | || || ||||| || | ||||||||| || Sbjct 644381 GGGGTAAGGACCCTCTTCTTGAGCTAGCTCGCACGATGCCTCGAGTGCTGCGTGATAGAT 644322 Query 106207 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT-CATCTGAATCAAATGCGTAGCGGC 106265 || || ||||| | || | ||||| |||| ||| ||||| || | ||| || Sbjct 644321 AGTCTCGAAGATCTGCTTGTTGAGTTCCTTAGCTTGCATA-GAATCGAAGGGGTAACGAA 644263 Query 106266 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 106325 || || |||| ||||||||||| ||||| | ||| || |||| |||||| | || Sbjct 644262 GAGCCATGAAAGCATCGGCGAGACCTTGTACACCGATACCGATGGGTCGGTGTCGGAGAT 644203 Query 106326 TAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 106382 | |||| || || ||| ||||||||| || || || || || ||| |||| Sbjct 644202 TGGACTTCTTTGCTTCAG---GAACGGGATAGAAGTTGACATCGATAACCTTGTTCAGAT 644146 Query 106383 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTT 106442 || || |||| ||| | | || ||||| || | |||| | ||| Sbjct 644145 TTCTGCAGACAACCTTGGCAACATCGTGAAGCTTCT-------GGAAGT--TATACTCGC 644095 Query 106443 CAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 106499 ||| ||| | | |||| |||||||| || ||||| ||||| || || ||| || Sbjct 644094 CATTGGTGATAAAGGTTGGTAGGGCGATGGAAGCCAAGTTGCAGACCGCGACCTCGTCGG 644035 Query 106500 TATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCT 106559 | | |||||| | ||| || || ||||||||||| | || || || |||| |||| Sbjct 644034 GGGCGGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCATTTGATGGTACCCAGGTTCT 643975 Query 106560 TTTGGTTACTCTT 106572 | ||||| ||||| Sbjct 643974 TCTGGTTGCTCTT 643962 >seq16 Length=487666 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6951 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7010 || |||| ||| |||||||||||||||| ||||| |||||| || | ||| | Sbjct 197578 CCGCAAAGCGAAAAGACACCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATAC 197519 Query 7011 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7070 || | ||| | ||||||||||||||||||||||| || || || | ||||| Sbjct 197518 GCCTACTGGATAGTCAAAAATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATT 197459 Query 7071 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAG 7130 || ||||| || ||||| || ||| |||| | || ||||| || || || | Sbjct 197458 CTTTTCAATCACGAATCGCCAAGAAGAGGGAGAACATTCGTCACGCGTAAAATAACGCGG 197399 Query 7131 GGTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCG 7190 | | ||||| || ||||| |||| | || | |||| ||| | | ||| Sbjct 197398 GCCGTGGCCGAAATCTCGATGGGTGTTCAGGATTGTCTTTACCTGGGGAACCTGGATGCG 197339 Query 7191 GAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGG 7235 | | || ||||| || || | ||||||||||||| |||||| Sbjct 197338 ATGCGTGACTGGGGACATGCTAGAGACTATGTTGAAGGAATGTGG 197294 >seq2 Length=2148610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||| ||||||| || || || || || || || | ||| ||||||||||| Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680 Query 117346 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | || | ||| || || || ||||||||||||||||| ||| Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAA-GAGCCAGAGAAGAAGATACCCTCTACAGC 698621 Query 117405 CGCAAACGC 117413 |||||||| Sbjct 698620 AGCAAACGC 698612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980291141560