Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq18 167 5e-36
seq1 131 4e-25
>seq18
Length=480229
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || || || || ||||| || ||||| |||||||| | || || | ||||||||
Sbjct 341844 AACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCTTC 341785
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || || ||||| | ||| |||||||| || |||||||| ||||| |||||
Sbjct 341784 GAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 341725
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| |||||||| || ||| ||| || || ||||||| |||||
Sbjct 341724 AATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTCTT 341665
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || |||||||| | |||||
Sbjct 341664 GCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || ||||| |||||||| ||||| |||||||| | |||||| || || || ||
Sbjct 342071 ACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCC 342012
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || || || | ||| |||||||| || || |||||||| ||||||||
Sbjct 342011 AGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 341952
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||||||||| ||| || ||||| | ||||| |||||
Sbjct 341951 ATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTG 341892
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| || || || || | |||||
Sbjct 341891 CCTGTCAGCGTCTTGACAAAGATCTGCAT 341863
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | ||| || ||||| ||||| || || || || || || || | || ||||
Sbjct 341624 AGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGTTCGT 341565
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| || | ||||| || ||||||||||| ||||||||||| || |||||||| ||
Sbjct 341564 CCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCCCTCC 341505
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||||||||| || ||||| || || ||||| ||||| ||
Sbjct 341504 TTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGAGTG 341445
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| ||||| || || ||||| | |||||
Sbjct 341444 ATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
>seq1
Length=2538488
Score = 131 bits (144), Expect = 4e-25
Identities = 135/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 194934 AAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAG 194993
|| ||| ||||||||||| || || || ||||| |||| || |||| || ||||||||
Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016
Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053
|||||| || |||||||| ||||| |||||||| || || ||||| || ||||| || ||
Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076
Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| |||||| || || |||||||| || || || || ||||| | |||||
Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109480619148923
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |