Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=1549313 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 ||| || || ||||| ||||||||||| | || | || |||| ||| | |||||| || Sbjct 643680 CATGAACATGTCTGGAATCCAAAGAGCAAAGAAAAGGTCTCTAGCTCTGACTTCTTCTTT 643621 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || |||| | || ||||| ||||| | ||||| ||||||||||| || | || Sbjct 643620 TCCGTGATTCTTGCGGAGATCAAGGAAGTCAAAGATATCTGCATGCCATGGCTCGATGTA 643561 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 || || | |||| ||||| || || || || ||||| | ||| | ||||||||||| Sbjct 643560 GATAGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGATCAACATAACGCGCAGTATTGTT 643501 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGA 48424 |||||| | ||| || || |||||||| || Sbjct 643500 GAAAACTCGCAGCATCGGTACGATACCATTGGA 643468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108315181160