Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq7 154 1e-31
seq6 113 4e-19
seq17 91.5 1e-12
seq18 87.8 1e-11
>seq7
Length=1189413
Score = 154 bits (170), Expect = 1e-31
Identities = 518/801 (65%), Gaps = 14/801 (2%)
Strand=Plus/Minus
Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGG 551840
||||| ||| || | ||||| ||||| |||||||| || || | || || | |
Sbjct 283707 GCTACCGCTGGTGACACCCATCTCGGTGGTGAAGATTTCGACAACCGTCTCGTTACCTTC 283648
Query 551841 TGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTT 551900
| || | |||| || || ||||| ||||| ||| | || | |||| |||||
Sbjct 283647 TTTGCTCAAGAATTCAAGCGAAAGAACAAGAAGGATATCTCCGGAAATGCCCGTGCTCTC 283588
Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACC 551960
| ||||||||||| || ||||| | || || || |||| || |||| | | || |||
Sbjct 283587 AGACGTCTAAGAACAGCATGCGAGCGTGCGAAGAGAACTCTATCCTCTGCTGCACAGACC 283528
Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCC 552020
|| |||||| | || || | || ||||| || || | | || | || | | ||
Sbjct 283527 ACCATTGAAATTGACTCGCTCTTCGAGGGTATCGACTTCTACACATCCATCACCCGTGCT 283468
Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080
||| || || | || |||||||| ||| ||||| || ||||| || | |||
Sbjct 283467 CGATTCGAGGAACTGTGCCAAGATCTCTTCAGATCCACAATGGACCCAGTCGAGAAGGTT 283408
Query 552081 TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCT 552140
| | || || |||||||| || || | || | || ||||| || || ||||| ||
Sbjct 283407 CTCCGTGACTCGAAGATTGACAAGTCTACTGTCAACGAGATTGTCCTCGTCGGTGGTTCC 283348
Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTA 552197
|| | || || | ||| | ||| | | ||| || ||||| || |||
Sbjct 283347 ACTCGTATCCCAAGAAT---CCAAAAGCTCGTTTCCGACTACTTCAACGG--AAAGGAGC 283293
Query 552198 AATGAAAGT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTA 552255
||| |||| | || || |||||||| || || || || ||||| | ||||| || |
Sbjct 283292 CATGCAAGTCCATCAACCCCGATGAGGCCGTCGCATACGGCGCCGCTGTCCAAGCTGCCA 283233
Query 552256 TTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315
|||| |||| | || ||||| ||| || | | || | ||||| ||||||
Sbjct 283232 TTCTCACTGGTGACACATCCGAAAAGACCCAAGATCTCCTCCTCCTCGATGTCGCTCCTC 283173
Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375
|||| || ||| | || || | || ||| || | ||| ||| ||| | ||||| || |
Sbjct 283172 TATCCCTCGGTATTGAGACTGCCGGTGGTGTTTTCACTCCTCTCATCAAGAGAAACACAA 283113
Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435
| ||||| || || ||| | || || || || | || || ||| ||| |||
Sbjct 283112 CAGTTCCTACCAAGAAGTCTGAAATCTTCTCCACATACGCCGACAACCAACCTGGTGTAT 283053
Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495
|||||| | || || || ||| | || || || || || | || || | |
Sbjct 283052 TGATTCAAGTCTTCGAGGGTGAACGTGCTAGAACAAAGGACAACAACCTCCTCGGGAAGT 282993
Query 552496 T--TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553
| | ||| | ||||| || ||||| || | || || || ||||| || ||||| ||
Sbjct 282992 TCGAACTTTCG--GGTATCCCACCTGCACCAAGAGGTGTTCCTCAAATCGAGGTTACCTT 282935
Query 552554 CGATATCGATGCCAATGGAAT 552574
|||| |||||||||| |||||
Sbjct 282934 CGATGTCGATGCCAACGGAAT 282914
Score = 95.1 bits (104), Expect = 1e-13
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| ||||| || || || |||||||| || || || || || ||||||
Sbjct 276332 GCGGTCATCACTGTTCCAGCCTACTTCAACGACTCACAGCGGCAGGCGACCAAGGATGCT 276273
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| | ||||| || || | || || || || ||||||||||| ||||| || ||||||
Sbjct 276272 GGTCAAATTGCAGGCCTAGAAGTACTGCGCATCATCAATGAACCGACTGCCGCCGCACTT 276213
Query 550520 GCATATGGACTTGATAA 550536
|| || ||| | || ||
Sbjct 276212 GCGTACGGATTAGAGAA 276196
>seq6
Length=1290484
Score = 113 bits (124), Expect = 4e-19
Identities = 159/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 368641 GATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGT 368700
|||||| ||||| || || || || ||||| || ||||||| || |||| || ||
Sbjct 70061 GATGATTACGAAGAGATGGTCTGCATCGGTTCCATCGAAGAATTACAGAAATTGTCGGGA 70120
Query 368701 GTGCAAA---ATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCA 368757
| || | || | ||| | ||| || || || ||| |||| | ||||| |||
Sbjct 70121 ---CGAACGGACATCACAGATCTCCATCGAGACAAGATCGATGACATAACCATTCCCTCA 70177
Query 368758 AAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCA 368817
|| |||| || ||| | || || || |||| ||| || || |||||||||||||||
Sbjct 70178 CAGCAAGGCAAGGGTGTTCTGCGCCGTGTCGAAGAAGTGTTCGACTGCTGGTTTGAATCA 70237
Query 368818 GGTTCTATGCCTTATGGTCAAATACATTATCCATTTGATAAC 368859
|||||||||||||||| |||| |||| ||||| || || |||
Sbjct 70238 GGTTCTATGCCTTATGCTCAAGTACACTATCCCTTCGAGAAC 70279
>seq17
Length=484702
Score = 91.5 bits (100), Expect = 1e-12
Identities = 249/382 (65%), Gaps = 6/382 (2%)
Strand=Plus/Plus
Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261
|| || | || || |||||||| || || || |||||||| | |||| | ||||||
Sbjct 466203 AAGGTATCAACCCCGATGAGGCCGTCGCTTACGGTGCCGCCGTACAAGGTGGTATTCTAG 466262
Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321
||||| || || | | | | || || || | || ||| ||||| | |
Sbjct 466263 CTGGAGAA------GAGGGATTGAAGGAAATGGTCCTCATCGACGTTTGCCCTCTTACAC 466316
Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381
| || | ||||| |||||| ||||||| || || || | ||||| || | |
Sbjct 466317 TCGGAATTGAAACCACAGGAGGTGTTATGACAAAACTCATTGGAAGAAACACAGTCGTAC 466376
Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441
| || ||||| | | || || || | || || ||| || ||||| ||||
Sbjct 466377 CCACCAAGAAATCACAAATCTTCTCCACTGCCGCCGACAACCAACCTACTGTTCTTATTC 466436
Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501
|| | | |||||| |||||| | || || ||||| || || | |||| || |
Sbjct 466437 AAGTCTATGAAGGTGAAAGACCCATGACAAAGGATAACAACCATTTGGGTAAATTCGAAC 466496
Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561
| | ||||| || || ||||| | || || ||||||||||| || ||||| || |||
Sbjct 466497 TGAACGGTATCCCACCCGCTCCAAGAGGTGTTCCGCAAATTGAGGTCACTTTTGAAGTCG 466556
Query 552562 ATGCCAATGGAATTTTGAATGT 552583
||||||||||||| |||| ||
Sbjct 466557 ATGCCAATGGAATCATGAAGGT 466578
>seq18
Length=480229
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|| || || || ||||| ||||| || || ||| |||||||| | ||| || | |
Sbjct 341852 AGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGT 341793
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| || || ||||| ||||| || | || || || || || ||||| || |||
Sbjct 341792 CCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCT 341733
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435
||||||||||| || || || ||||| ||||||| | ||| || || ||
Sbjct 341732 TTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTAC-CTCCAGGGT 341674
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || ||||| || || || ||||| || ||||||
Sbjct 341673 AATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCATA 341634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029292350968810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |