Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 154 1e-31 seq6 113 4e-19 seq17 91.5 1e-12 seq18 87.8 1e-11 >seq7 Length=1189413 Score = 154 bits (170), Expect = 1e-31 Identities = 518/801 (65%), Gaps = 14/801 (2%) Strand=Plus/Minus Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGG 551840 ||||| ||| || | ||||| ||||| |||||||| || || | || || | | Sbjct 283707 GCTACCGCTGGTGACACCCATCTCGGTGGTGAAGATTTCGACAACCGTCTCGTTACCTTC 283648 Query 551841 TGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTT 551900 | || | |||| || || ||||| ||||| ||| | || | |||| ||||| Sbjct 283647 TTTGCTCAAGAATTCAAGCGAAAGAACAAGAAGGATATCTCCGGAAATGCCCGTGCTCTC 283588 Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACC 551960 | ||||||||||| || ||||| | || || || |||| || |||| | | || ||| Sbjct 283587 AGACGTCTAAGAACAGCATGCGAGCGTGCGAAGAGAACTCTATCCTCTGCTGCACAGACC 283528 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCC 552020 || |||||| | || || | || ||||| || || | | || | || | | || Sbjct 283527 ACCATTGAAATTGACTCGCTCTTCGAGGGTATCGACTTCTACACATCCATCACCCGTGCT 283468 Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080 ||| || || | || |||||||| ||| ||||| || ||||| || | ||| Sbjct 283467 CGATTCGAGGAACTGTGCCAAGATCTCTTCAGATCCACAATGGACCCAGTCGAGAAGGTT 283408 Query 552081 TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCT 552140 | | || || |||||||| || || | || | || ||||| || || ||||| || Sbjct 283407 CTCCGTGACTCGAAGATTGACAAGTCTACTGTCAACGAGATTGTCCTCGTCGGTGGTTCC 283348 Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTA 552197 || | || || | ||| | ||| | | ||| || ||||| || ||| Sbjct 283347 ACTCGTATCCCAAGAAT---CCAAAAGCTCGTTTCCGACTACTTCAACGG--AAAGGAGC 283293 Query 552198 AATGAAAGT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTA 552255 ||| |||| | || || |||||||| || || || || ||||| | ||||| || | Sbjct 283292 CATGCAAGTCCATCAACCCCGATGAGGCCGTCGCATACGGCGCCGCTGTCCAAGCTGCCA 283233 Query 552256 TTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315 |||| |||| | || ||||| ||| || | | || | ||||| |||||| Sbjct 283232 TTCTCACTGGTGACACATCCGAAAAGACCCAAGATCTCCTCCTCCTCGATGTCGCTCCTC 283173 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 |||| || ||| | || || | || ||| || | ||| ||| ||| | ||||| || | Sbjct 283172 TATCCCTCGGTATTGAGACTGCCGGTGGTGTTTTCACTCCTCTCATCAAGAGAAACACAA 283113 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | ||||| || || ||| | || || || || | || || ||| ||| ||| Sbjct 283112 CAGTTCCTACCAAGAAGTCTGAAATCTTCTCCACATACGCCGACAACCAACCTGGTGTAT 283053 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 |||||| | || || || ||| | || || || || || | || || | | Sbjct 283052 TGATTCAAGTCTTCGAGGGTGAACGTGCTAGAACAAAGGACAACAACCTCCTCGGGAAGT 282993 Query 552496 T--TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553 | | ||| | ||||| || ||||| || | || || || ||||| || ||||| || Sbjct 282992 TCGAACTTTCG--GGTATCCCACCTGCACCAAGAGGTGTTCCTCAAATCGAGGTTACCTT 282935 Query 552554 CGATATCGATGCCAATGGAAT 552574 |||| |||||||||| ||||| Sbjct 282934 CGATGTCGATGCCAACGGAAT 282914 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| || || || |||||||| || || || || || |||||| Sbjct 276332 GCGGTCATCACTGTTCCAGCCTACTTCAACGACTCACAGCGGCAGGCGACCAAGGATGCT 276273 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||| || || | || || || || ||||||||||| ||||| || |||||| Sbjct 276272 GGTCAAATTGCAGGCCTAGAAGTACTGCGCATCATCAATGAACCGACTGCCGCCGCACTT 276213 Query 550520 GCATATGGACTTGATAA 550536 || || ||| | || || Sbjct 276212 GCGTACGGATTAGAGAA 276196 >seq6 Length=1290484 Score = 113 bits (124), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 368641 GATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGT 368700 |||||| ||||| || || || || ||||| || ||||||| || |||| || || Sbjct 70061 GATGATTACGAAGAGATGGTCTGCATCGGTTCCATCGAAGAATTACAGAAATTGTCGGGA 70120 Query 368701 GTGCAAA---ATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCA 368757 | || | || | ||| | ||| || || || ||| |||| | ||||| ||| Sbjct 70121 ---CGAACGGACATCACAGATCTCCATCGAGACAAGATCGATGACATAACCATTCCCTCA 70177 Query 368758 AAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCA 368817 || |||| || ||| | || || || |||| ||| || || ||||||||||||||| Sbjct 70178 CAGCAAGGCAAGGGTGTTCTGCGCCGTGTCGAAGAAGTGTTCGACTGCTGGTTTGAATCA 70237 Query 368818 GGTTCTATGCCTTATGGTCAAATACATTATCCATTTGATAAC 368859 |||||||||||||||| |||| |||| ||||| || || ||| Sbjct 70238 GGTTCTATGCCTTATGCTCAAGTACACTATCCCTTCGAGAAC 70279 >seq17 Length=484702 Score = 91.5 bits (100), Expect = 1e-12 Identities = 249/382 (65%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || || | || || |||||||| || || || |||||||| | |||| | |||||| Sbjct 466203 AAGGTATCAACCCCGATGAGGCCGTCGCTTACGGTGCCGCCGTACAAGGTGGTATTCTAG 466262 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 ||||| || || | | | | || || || | || ||| ||||| | | Sbjct 466263 CTGGAGAA------GAGGGATTGAAGGAAATGGTCCTCATCGACGTTTGCCCTCTTACAC 466316 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | || | ||||| |||||| ||||||| || || || | ||||| || | | Sbjct 466317 TCGGAATTGAAACCACAGGAGGTGTTATGACAAAACTCATTGGAAGAAACACAGTCGTAC 466376 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 | || ||||| | | || || || | || || ||| || ||||| |||| Sbjct 466377 CCACCAAGAAATCACAAATCTTCTCCACTGCCGCCGACAACCAACCTACTGTTCTTATTC 466436 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501 || | | |||||| |||||| | || || ||||| || || | |||| || | Sbjct 466437 AAGTCTATGAAGGTGAAAGACCCATGACAAAGGATAACAACCATTTGGGTAAATTCGAAC 466496 Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 | | ||||| || || ||||| | || || ||||||||||| || ||||| || ||| Sbjct 466497 TGAACGGTATCCCACCCGCTCCAAGAGGTGTTCCGCAAATTGAGGTCACTTTTGAAGTCG 466556 Query 552562 ATGCCAATGGAATTTTGAATGT 552583 ||||||||||||| |||| || Sbjct 466557 ATGCCAATGGAATCATGAAGGT 466578 >seq18 Length=480229 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || ||||| ||||| || || ||| |||||||| | ||| || | | Sbjct 341852 AGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGT 341793 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || ||||| ||||| || | || || || || || ||||| || ||| Sbjct 341792 CCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCT 341733 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 ||||||||||| || || || ||||| ||||||| | ||| || || || Sbjct 341732 TTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTAC-CTCCAGGGT 341674 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| || || || ||||| || |||||| Sbjct 341673 AATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCATA 341634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029292350968810