Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 116 7e-21 seq5 95.1 2e-14 >seq2 Length=2148610 Score = 116 bits (128), Expect = 7e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||| |||||||| | || | ||||| || | ||||||| ||||||| | Sbjct 698762 AGAGTAAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAA 698703 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | | || ||||||| || | || |||||||| || || | || |||||||||| Sbjct 698702 ACGTCAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAG 698643 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || || ||||| || | || || || | || | || Sbjct 698642 AGAAGAAGATACCCTCTACAGCAGCAAACGCCACGATGCGTTCACCAAAGGTAGACTCCT 698583 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 ||||||| ||||||| ||| ||||| || ||||| Sbjct 698582 TGTCTGAAATCCAGGTAAGAGCCCACTCGGCCTT 698549 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||| || |||||| || || || ||||| ||||| | ||||||| ||| Sbjct 698311 GATCTGGAAGCCATAGAAGCATCTTGCTTCGGCTACCTGTACTTCGTTTGAGAATCGCTC 698252 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567 || || ||||| ||||| |||||||| | || |||||||||||| |||||||| Sbjct 698251 GAGGAGGTTCTCGTTGACGATCCCATCGGCAGAAGCAAAGAAGGCGAGGACATG 698198 >seq5 Length=1549313 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 213777 GCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGG 213835 |||||||| | || |||||| |||| | ||| ||||| ||||||||| ||| || Sbjct 643724 GCGGGACAGAAAAGAGGCCAGTCACCGTTCTGCTC-GACTCGTCGCATGAACATGTCTGG 643666 Query 213836 GACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 | ||| || || ||| ||||| || | || || || ||| || ||||| Sbjct 643665 AATCCAAAGAGCAAAGAAAAGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCG 643606 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 ||||| || ||||||||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 643605 GAGATCAAGGAAGTCAAAGATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACC 643546 Query 213956 CG---GCCTCTTGCCGCCCTGGTCCAC 213979 | || | ||||| ||||| || || Sbjct 643545 AGGTCGCTTGTTGCCACCCTGATCAAC 643519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531996552960