Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 seq5 104 4e-17 >seq2 Length=2148610 Score = 111 bits (122), Expect = 3e-19 Identities = 131/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| ||||| || || | || || ||||||||||| ||||| ||||| ||| || | Sbjct 698589 CTACCTTTGGTGAACGCATCGTGGCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCT 698648 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCC 25983 | ||||| ||||||| ||||||||| || || |||| ||||||| || |||||| Sbjct 698649 CTTTTGCTTCCATCTTTTGGCTCAAGAAGCGCGGTCTCATG-CCGGGCTTGACGTTTTCC 698707 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||||||||||| || || || ||||| || | || ||||| ||| | |||| Sbjct 698708 AACGAGCTCATCTCGAGAGATGAAGGTCTACATACCGACTTTGCTTGCTTACTCT 698762 >seq5 Length=1549313 Score = 104 bits (114), Expect = 4e-17 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 |||| || ||| || || || ||||| ||||| ||||| |||||| |||||||||| | Sbjct 644352 CGCACGA-TGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTGAGTTCC 644294 Query 221465 TTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTG 221523 || || | |||| |||||| ||| || | |||||| | ||||| || || || Sbjct 644293 TTAGCTTGCATAGAATCGAAGGGGTAACGAAGAGCCATGAAAG-CATCGGCGAGACCTTG 644235 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATA 221583 ||| |||||||||||||| | ||||| ||||| ||||| || |||||||| Sbjct 644234 TACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAGGAACGGGATA 644175 Query 221584 AAAGTTGACGTCGATCAGATTGTTGAGGTT 221613 |||||||| ||||| | ||||| || || Sbjct 644174 GAAGTTGACATCGATAACCTTGTTCAGATT 644145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843998871360