Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 159 2e-33 seq17 122 6e-22 seq18 96.9 2e-14 >seq7 Length=1189413 Score = 159 bits (176), Expect = 2e-33 Identities = 536/830 (65%), Gaps = 6/830 (1%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 ||||| ||| | ||| || | || || ||||| || | ||||| |||||||||||| Sbjct 283731 GAAGAGGGTATCTTCGAAGTCAAGGCTACCGCTGGTGACACCCATCTCGGTGGTGAAGAT 283672 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGAT 475459 || || || | || || | | | || | |||| |||||| | || || || ||| Sbjct 283671 TTCGACAACCGTCTCGTTACCTTCTTTGCTCAAGAATTCAAGCGAAAGAACAAGAAGGAT 283612 Query 475460 CTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGA 475519 | || | ||| || | |||||||| ||||| || || || ||||| ||| || Sbjct 283611 ATCTCCGGAAATGCCCGTGCTCTCAGACGTCTAAGAACAGCATGCGAGCGTGCGAAGAGA 283552 Query 475520 GCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGAT 475579 |||| || |||||| | || || || ||||| |||| || || || || || || || Sbjct 283551 ACTCTATCCTCTGCTGCACAGACCACCATTGAAATTGACTCGCTCTTCGAGGGTATCGAC 283492 Query 475580 TATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA 475639 | | || || || | ||| ||| || || | || |||||||| ||| Sbjct 283491 TTCTACACATCCATCACCCGTGCTCGATTCGAGGAACTGTGCCAAGATCTCTTCAGATCC 283432 Query 475640 ACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCAT 475699 ||||| || || || || | |||||| | || || || ||||||| || ||| | Sbjct 283431 ACAATGGACCCAGTCGAGAAGGTTCTCCGTGACTCGAAGATTGACAAGTCTACTGTCAAC 283372 Query 475700 GAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA 475759 || ||||| || || || ||||| || | || |||| ||| | | | |||| Sbjct 283371 GAGATTGTCCTCGTCGGTGGTTCCACTCGTATCCCAAGAATCCAAAAGCTCGTTTCCGAC 283312 Query 475760 TATTTTAATGGTAAAAAGTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATG 475817 || || || || || || | || |||| | || || ||||| || || ||||| | Sbjct 283311 TACTTCAACGGAAAGGAGCCA--TGCAAGTCCATCAACCCCGATGAGGCCGTCGCATACG 283254 Query 475818 GAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAA-ACTAAATAATATT 475876 | || ||||||||||| || ||| | | ||| | || ||| || || || | | | Sbjct 283253 GCGCCGCTGTCCAAGCTGCCATTCTCACTGGTGACACATCCGAAAAGACCCAAGA-TCTC 283195 Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 | || | || || |||| || || | ||| |||| || | || || || | ||| Sbjct 283194 CTCCTCCTCGATGTCGCTCCTCTATCCCTCGGTATTGAGACTGCCGGTGGTGTTTTCACT 283135 Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996 ||| || | ||||| || | | || ||| || || || | || ||||| || Sbjct 283134 CCTCTCATCAAGAGAAACACAACAGTTCCTACCAAGAAGTCTGAAATCTTCTCCACATAC 283075 Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAA 476056 | || || ||| | |||| || ||| |||| || |||||| | || || Sbjct 283074 GCCGACAACCAACCTGGTGTATTGATTCAAGTCTTCGAGGGTGAACGTGCTAGAACAAAG 283015 Query 476057 GATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTT 476116 || || ||| || || | || | ||| ||||| || ||||| || ||||| ||| Sbjct 283014 GACAACAACCTCCTCGGGAAGTTCGAACTTTCGGGTATCCCACCTGCACCAAGAGGTGTT 282955 Query 476117 CCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 |||||||| || ||||| || ||| | ||||| || || || || || || Sbjct 282954 CCTCAAATCGAGGTTACCTTCGATGTCGATGCCAACGGAATCCTCAACGT 282905 >seq17 Length=484702 Score = 122 bits (134), Expect = 6e-22 Identities = 290/435 (67%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 || || | || || ||||| || || || || || || || || |||| | |||| || Sbjct 466203 AAGGTATCAACCCCGATGAGGCCGTCGCTTACGGTGCCGCCGTACAAGGTGGTATTCTAG 466262 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 | || ||| ||| | | || | || || || | ||||| || ||| || Sbjct 466263 CTGG------AGAAGAGGGATTGAAGGAAATGGTCCTCATCGACGTTTGCCCTCTTACAC 466316 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATAC--TCCTAT 475962 | || ||||||| ||||| ||||||| || || |||| ||||| || || || Sbjct 466317 TCGGAATTGAAACCACAGGAGGTGTTATGACAAAACTCATTGGAAGAAACACAGTCGTA- 466375 Query 475963 CCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 |||| ||| |||||| || | || |||||| | || || ||| | ||||| || Sbjct 466376 CCCAC-CAAGAAATCACAAATCTTCTCCACTGCCGCCGACAACCAACCTACTGTTCTTAT 466434 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 ||| ||| ||||||||||||| | || || ||||| ||| | | || | || | Sbjct 466435 TCAAGTCTATGAAGGTGAAAGACCCATGACAAAGGATAACAACCATTTGGGTAAATTCGA 466494 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 || | ||||| || || ||||| ||||| ||||| |||||||| || |||||||| | Sbjct 466495 ACTGAACGGTATCCCACCCGCTCCAAGAGGTGTTCCGCAAATTGAGGTCACTTTTGAAGT 466554 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAA 476202 ||||| ||||| || | || ||| | || || || ||| | |||||| || Sbjct 466555 CGATGCCAATGGAATCATGAAGGTTGCAGCAGCCGACAAGGCTACTGGAAAGAGTGAATC 466614 Query 476203 TATAACTATTACAAA 476217 ||| || ||||| || Sbjct 466615 TATCACCATTACCAA 466629 >seq18 Length=480229 Score = 96.9 bits (106), Expect = 2e-14 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 ||||||||| || ||||| || ||| ||||| || || ||||| | ||||| || Sbjct 342081 AAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCT 342022 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 || || || ||||| ||||||||||| | || ||||| || || || || ||||| Sbjct 342021 TCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTC 341962 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGG 480732 ||||||||| ||||| |||||| ||||| || || | | | | || ||| || Sbjct 341961 CTTGTCTTGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAA-GG 341903 Query 480733 TAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || ||||| || || || || Sbjct 341902 TAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTG 341866 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| || ||| || | ||||| || | || || Sbjct 341628 ACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGT 341569 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || | |||||| || || || |||||||||||||| || || ||||| || Sbjct 341568 TCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCC 341509 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| || || ||||||| || | | |||| Sbjct 341508 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCA-CCTCAA 341450 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| | ||||| ||||| || || Sbjct 341449 GAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTG 341410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176240255212