Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 154 2e-32 seq16 102 1e-16 seq2 82.4 9e-11 >seq5 Length=1549313 Score = 154 bits (170), Expect = 2e-32 Identities = 650/1012 (64%), Gaps = 46/1012 (5%) Strand=Plus/Plus Query 75950 AAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTA 76009 ||||| ||||| ||||| |||| || ||||| |||| || | ||||| || ||| | Sbjct 643962 AAGAGCAACCAGAAGAACCTGGGTACCATCAAATGCTCCAACTTGTGCACTGAGATTATC 644021 Query 76010 GAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG 76069 |||||| | | || ||| || || ||||| ||||| || |||||||| |||| Sbjct 644022 GAGTACTCCGCCCCCGACGAGGTCGCGGTCTGCAACTTGGCTTCCATCGCCCTACCAACC 644081 Query 76070 TATGTCA---ATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAG 76126 | | ||| ||| ||| | |||| | || ||||| || | | ||| Sbjct 644082 TTTATCACCAATGGCGAGTATA--ACTTCC-------AGAAGCTTCACGATGTTGCCAAG 644132 Query 76127 ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGC- 76185 |||| || |||||| ||| || || || || || ||||||||| ||| Sbjct 644133 GTTGTCTGCAGAAATCTGAACAAGGTTATCGATGTCAACTTCTATCCCGTTC---CTGAA 644189 Query 76186 GCGAA--AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || || |||| ||| | |||||| |||| || ||| | ||||| ||||||||||| ||| Sbjct 644190 GCAAAGAAGTCCAATCTCCGACACCGACCCATCGGTATCGGTGTACAAGGTCTCGCCGAT 644249 Query 76244 GTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG-AAGCCAAGGAGATGAATGCTCG 76302 | || || || ||| | || ||||| ||| |||| ||||| | || | Sbjct 644250 GCTTTCATGGCTCTTCGTTACCCCTTCGATTC-TATGCAAGCTAAGGAACTCAACAAGCA 644308 Query 76303 TATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCA 76362 ||||| || || || ||||||||| | || ||||| || || | ||| ||| | Sbjct 644309 GATCTTCGAGACTATCTATCACGCAGCACTCGAGGCATCGTGCGAGCTAGCTCAAGAAGA 644368 Query 76363 AGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATAT 76422 ||| | || || | ||||| ||||| || || | || | ||||||| |||| | Sbjct 644369 GGGTCCTTACCCCACCTACGAGGGATCTCCTGCATCGAAGGGAGAACTTCAGTATGATTT 644428 Query 76423 GTGGGAAGGTGAAACCAAGCTCA-ACTACGACTGGGATGTTCTCAAGGAACGCATCAAGG 76481 |||| | || | || | | || ||||||| | |||||||| | |||||| Sbjct 644429 ATGGGGA-GTCACTCCTTCCGAACTCTGGGACTGGGCTTCGCTCAAGGACCAGATCAAGC 644487 Query 76482 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 76541 || | ||| | || ||| ||| | | || || |||||||| ||||| ||| | |||| Sbjct 644488 AGCATGGTATCCGCAACTCTCTCCTCCTCGCTCCCATGCCAACTGCCTCTACCTCGCAAA 644547 Query 76542 TCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCC 76601 || | || || || |||||||| |||||||| | || ||||| | | | Sbjct 644548 TCCTCGGCTTCAACGAGTGCTTTGAGCCATACACGTCGAATATCTATACTCGCCGCGTGC 644607 Query 76602 TCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGAT-TGGT 76660 | || || ||||| |||||||| || | | | | |||| | | | Sbjct 644608 TAGCTGGCGAGTTCCAGATTGTCAA--------TCCTTGGTTGCTGCGAGAACTTGTCGA 644659 Query 76661 CTCTGGTCCAAGGATATGAAGGATCTCA------TGGTGAAAGCGGGT---GGTTCCATT 76711 | || | | ||| ||| | ||||||| || | | || | ||||| | Sbjct 644660 CCGAGGGCTATGGA-ATG-ACGATCTCAAGAATCTGATCATTGCTCATCAAGGTTCAGTC 644717 Query 76712 CAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATC 76771 || ||||| | | | || | |||| ||||| | ||||| ||||| ||||| ||| Sbjct 644718 CAGCATATCCCTCACCTTCCCGTTGATGTCAAGGCTATCTACAAGACAGTCTGGGAGATC 644777 Query 76772 AAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 76831 | |||| |||| |||||| | || || ||||||| |||||||| | ||||| Sbjct 644778 AGCCAAAAAGCCATCATCGACATGTCTGCTGACCGTGGTCCGTTCATTGACC--AGTCAC 644835 Query 76832 AGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGT 76889 | | |||| || | || || || || | | ||||| | || ||||| | | Sbjct 644836 AATCACTGAACGTACACTTGCAATCGCCTACATTCGCACAGCTCACATCCATGCACTTTT 644895 Query 76890 ACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGGC 76941 ||| |||||| |||| | ||||| |||||||||||||||||| | ||||| Sbjct 644896 ACGGGTGGAAGAAGGGATTGAAAACGGGAATGTACTATCTCCGAACCAAGGC 644947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 75522 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGG 75581 ||||||| | || ||||| || || || ||| || ||||| ||||| |||| | | Sbjct 643472 ATGGTATCGTACCGATGCTGCGAGTTTTCAACAATACTGCGCGTTATGTTGATCAGG-GT 643530 Query 75582 GGCGTC--GCAAGG-GGT-CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATG 75637 ||| | || | ||| || | || ||||| | || ||||||||||| |||||| | Sbjct 643531 GGCAACAAGCGACCTGGTGCCTTTGCTATCTACATCGAGCCATGGCATGCAGATATCTTT 643590 Query 75638 GAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTT 75696 || |||||||| | || || || || | ||||| | || | | |||||| || || Sbjct 643591 GACTTCCTTGATCTCCGCAAGAATCACGGAAAAGAAGAAG-TCAGAGCTAGAGACCTTTT 643649 Query 75697 TTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTC 75756 | | || |||||||||||| | |||||| || || ||| || ||| | ||| | Sbjct 643650 CTTTGCTCTTTGGATTCCAGACATGTTCATGCGACGAGTCGAGCAGAACGGTGACTGGCC 643709 Query 75757 TCTTTTCTGTCC 75768 |||||||||||| Sbjct 643710 TCTTTTCTGTCC 643721 >seq16 Length=487666 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177772 CCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGAT 177831 |||| ||| || |||||||| ||||| || ||||| | || | ||||||||| || Sbjct 197430 CCTCTTCTTGGCGATTCGTGATTGAAAAGAATTCCATTAGATGCGTGCATACCATAAGAC 197489 Query 177832 TCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGT 177891 || |||||||||||||| | ||||| ||| | || | || || ||| || || Sbjct 197490 TCGCGGTAATTTTTGACTATCCAGTAGGCGTATAGCTTCGCTACACCGTAGGGAGAGCGA 197549 Query 177892 GGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAA 177951 |||||||||||||||| || |||| || |||| | ||||| || ||| ||| || Sbjct 197550 GGGTAGAAGGGTGTCTTTTCGCTTTGCGGGATTTCCTGTACTTTGCCGTACAGCTCGGAT 197609 Query 177952 GTTGAGGCTTG 177962 ||||| || || Sbjct 197610 GTTGAAGCCTG 197620 >seq2 Length=2148610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 |||||||| ||| ||||||||||||||||| || || || ||| | || | |||| | Sbjct 698612 GCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCTC-TTTTGCTTCCATCTTTTGGCT 698670 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 |||||||| ||||||||||| ||| | || || || || || || || ||||||| Sbjct 698671 CAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATCTCGAGAGATGA 698730 Query 65208 GGGTCTCCA 65216 ||||| || Sbjct 698731 AGGTCTACA 698739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569085458720