Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18 122 2e-22 >seq18 Length=480229 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| || ||||| |||||||||| || | ||| || ||| || || || Sbjct 341864 ATACCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCT 341805 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| ||| | ||| || | || ||||| ||||| || |||| |||||| || || Sbjct 341804 GATAGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGT 341745 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| || |||| || | || ||| ||||| ||||| || Sbjct 341744 GGAATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCT 341685 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || ||||| || || ||||| Sbjct 341684 ACCTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || || || ||||| | |||| |||||| ||| || || || || Sbjct 342090 ACCACCTCTAAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGA 342031 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || || || || | || || || |||||||| |||| |||||| || || || Sbjct 342030 AAGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGG 341971 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || ||| | || | ||| ||| || ||||||||||| || Sbjct 341970 GATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGAC 341911 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || || || ||||| ||||| || ||||| || ||||| Sbjct 341910 TTCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653624048080