Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq18 107 3e-18
seq2 89.7 8e-13
>seq18
Length=480229
Score = 107 bits (118), Expect = 3e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || ||||||| || || ||||| | || || ||| ||||
Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||||| || || || ||||||||||| ||||| || || || |||
Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||| || ||||||||||||||| | || |||||||||| ||
Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAAC 341814
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| || ||| |||| || |||
Sbjct 341815 ATTCAGAAGGAGTCGACCCTGCAT 341838
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||| || || || ||||| || |||||||| |||
Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || | || || ||||| || |||||||| || || || |||
Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||||| ||| ||||||||||| || || || ||| | || ||||| ||
Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| |||||| | || || |||
Sbjct 342043 ATTCAGAAAGAGTCTACTCTCCAT 342066
>seq2
Length=2148610
Score = 89.7 bits (98), Expect = 8e-13
Identities = 121/166 (73%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
||| || ||||| || || |||| |||||||||||| || || | ||||| ||||||
Sbjct 698758 TAAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGT 698699
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
|| || ||||| | ||| | || || |||||||| || || || ||| | ||| ||
Sbjct 698698 CAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAA 698639
Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA 18318
||| |||||||| || ||| || ||||| | | | |||| ||||
Sbjct 698638 GAAGATACCCTCTACAGCA-GCAAACGCCACGATGCGTTCACCAAA 698594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871368760400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |