Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 105 2e-17 seq3 104 7e-17 seq21 89.7 2e-12 >seq5 Length=1549313 Score = 105 bits (116), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTA 155994 ||||| |||| |||||||||| || || | ||||| || | | ||||||||||| || | Sbjct 643662 CCAAAGAGCAAAGAAAAGGTCTCTAGC-TCTGACTTCTTCTTTTCCGTGATTCTTGCGGA 643604 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | ||| || ||||| | ||| |||||| | || |||||||| |||| Sbjct 643603 GATCAAGGAAGTCAAAGATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAG 643544 Query 156055 TCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | |||| ||||||||||| ||||| || ||||| || ||||| || | ||||| | Sbjct 643543 GTCGCTTGTTGCCACCCTGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCG 643484 Query 156112 GAATAATACCATTGGA 156127 | | ||||||||||| Sbjct 643483 GTACGATACCATTGGA 643468 >seq3 Length=2053931 Score = 104 bits (114), Expect = 7e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 || |||||| |||| |||||||| |||||||||||||| | ||| || ||||| Sbjct 1947261 TCCTCCATAGCTTTGACCAAACGACGTTGAATATAACCAGTCTCGGCTGTCTTAACAGCC 1947320 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| ||||||| ||||||||||||||| | | || | || ||| || Sbjct 1947321 GTATCAATGAGACCTTCACGACCTCCCATAGCATGGAAGTAGAATTCCTGTGG-CGTAAG 1947379 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | || |||| || |||||||| | ||||| | | ||| |||| Sbjct 1947380 ACCTCGTAGGTATGAATTCTCGACAAAACCACGAGATTCGGGGGTGTAGTCATCCTTGAG 1947439 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | | || | || | |||| |||||| || ||||| | || Sbjct 1947440 GAAATGGGGCAGCGTACGGAACTTGAAACCAAAGGGGACACGCTTGCCCTCAACAATTTG 1947499 Query 302811 CTGTCC 302816 ||| || Sbjct 1947500 CTGACC 1947505 >seq21 Length=368531 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GC-GAG 251482 || |||||||| ||||| |||| || || ||| | | || |||| ||| || | | Sbjct 211306 CAAACATGGACTCTGTAGCCATCCGAAGCCTCAAACATCCTCTCCTTCAAGAAAGCAGCG 211247 Query 251483 ATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGC 251542 || |||||| | ||||||||||||||||||||| || |||||||| | ||||||||| | Sbjct 211246 AT--ACCGTGAGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAAACCACCATCCC 211189 Query 251543 GAGCCCTACCCTCGGCAGGCTG 251564 | ||||| || ||||||| Sbjct 211188 TGGATCTACCTTCCACAGGCTG 211167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816298821253