Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5 105 2e-17
seq3 104 7e-17
seq21 89.7 2e-12
>seq5
Length=1549313
Score = 105 bits (116), Expect = 2e-17
Identities = 143/196 (73%), Gaps = 5/196 (3%)
Strand=Plus/Minus
Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTA 155994
||||| |||| |||||||||| || || | ||||| || | | ||||||||||| || |
Sbjct 643662 CCAAAGAGCAAAGAAAAGGTCTCTAGC-TCTGACTTCTTCTTTTCCGTGATTCTTGCGGA 643604
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054
| || | ||| || ||||| | ||| |||||| | || |||||||| ||||
Sbjct 643603 GATCAAGGAAGTCAAAGATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAG 643544
Query 156055 TCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
| |||| ||||||||||| ||||| || ||||| || ||||| || | ||||| |
Sbjct 643543 GTCGCTTGTTGCCACCCTGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCG 643484
Query 156112 GAATAATACCATTGGA 156127
| | |||||||||||
Sbjct 643483 GTACGATACCATTGGA 643468
>seq3
Length=2053931
Score = 104 bits (114), Expect = 7e-17
Identities = 172/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
|| |||||| |||| |||||||| |||||||||||||| | ||| || |||||
Sbjct 1947261 TCCTCCATAGCTTTGACCAAACGACGTTGAATATAACCAGTCTCGGCTGTCTTAACAGCC 1947320
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690
|||||||| ||||| ||||||| ||||||||||||||| | | || | || ||| ||
Sbjct 1947321 GTATCAATGAGACCTTCACGACCTCCCATAGCATGGAAGTAGAATTCCTGTGG-CGTAAG 1947379
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | | | || |||| || |||||||| | ||||| | | ||| ||||
Sbjct 1947380 ACCTCGTAGGTATGAATTCTCGACAAAACCACGAGATTCGGGGGTGTAGTCATCCTTGAG 1947439
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || ||||| || | | || | || | |||| |||||| || ||||| | ||
Sbjct 1947440 GAAATGGGGCAGCGTACGGAACTTGAAACCAAAGGGGACACGCTTGCCCTCAACAATTTG 1947499
Query 302811 CTGTCC 302816
||| ||
Sbjct 1947500 CTGACC 1947505
>seq21
Length=368531
Score = 89.7 bits (98), Expect = 2e-12
Identities = 107/142 (75%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GC-GAG 251482
|| |||||||| ||||| |||| || || ||| | | || |||| ||| || | |
Sbjct 211306 CAAACATGGACTCTGTAGCCATCCGAAGCCTCAAACATCCTCTCCTTCAAGAAAGCAGCG 211247
Query 251483 ATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGC 251542
|| |||||| | ||||||||||||||||||||| || |||||||| | ||||||||| |
Sbjct 211246 AT--ACCGTGAGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAAACCACCATCCC 211189
Query 251543 GAGCCCTACCCTCGGCAGGCTG 251564
| ||||| || |||||||
Sbjct 211188 TGGATCTACCTTCCACAGGCTG 211167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816298821253
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |