Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18 118 1e-21 >seq18 Length=480229 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || ||||| | ||||| || | || Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || ||||| ||| Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| ||||| || || ||||||||||| || | | || ||||| ||| Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| || || || || || || Sbjct 342043 ATTCAGAAAGAGTCTACTCTCCA 342065 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || || |||||| | | Sbjct 341635 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCT 341694 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||| ||||| || || || ||||| ||| Sbjct 341695 GATACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 341754 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| || ||| | | | |||||||| ||| Sbjct 341755 CAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAAC 341814 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || || |||| | || |||| || || Sbjct 341815 ATTCAGAAGGAGTCGACCCTGCATCTGGTTCTTCGGCTGCGAGGTGG 341861 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || | | Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || ||||| ||| Sbjct 341467 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAA 341526 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| |||||||| || | |||||| ||| | | ||||| |||||| Sbjct 341527 CAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAAC 341586 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || |||| | ||| | || || || Sbjct 341587 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGG 341633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897211963320