Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 134 9e-27 seq1 86.0 4e-12 >seq18 Length=480229 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||| ||||||||||| || ||| | || |||| Sbjct 341618 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGTTCGTCCATCC 341559 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | |||||| ||||||||||| || ||||| ||||| |||| | ||||||||||| Sbjct 341558 TCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCCCTCCTTGTCC 341499 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || |||| || |||||| Sbjct 341498 TGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGAGTGATGGTC 341439 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || ||||||||||| Sbjct 341438 TTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| ||||||||||||||| || || ||||| | || |||| Sbjct 341846 AGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCT 341787 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| ||| || ||||| | || | ||||| || || Sbjct 341786 TCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 341727 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | || || || | ||| || ||| Sbjct 341726 TGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTC 341667 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| ||||||||||| Sbjct 341666 TTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| || ||||| || | | | || ||||| ||||| || || || Sbjct 342054 CTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAA 341995 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||| || ||||| | || | || |||||||| | || || ||||| | Sbjct 341994 AATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTGAC--A 341937 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | |||| || || | |||||| || | ||| || ||||| || || || |||| Sbjct 341936 T--TATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTCAGCGTCT 341879 Query 34962 TTACAAAGATCTGCAT 34977 | |||||||||||||| Sbjct 341878 TGACAAAGATCTGCAT 341863 >seq1 Length=2538488 Score = 86.0 bits (94), Expect = 4e-12 Identities = 120/166 (72%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| | || | || || || |||||||| ||||| Sbjct 607972 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAA 608031 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||||||| || ||||| | || | ||||||||||| | || || ||||| | Sbjct 608032 GATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--A 608089 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 | | ||||| || || |||||| || | ||| |||||||| Sbjct 608090 T--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692526112711