Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7 197 1e-44 >seq7 Length=1189413 Score = 197 bits (218), Expect = 1e-44 Identities = 723/1118 (65%), Gaps = 33/1118 (3%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || ||||| || || |||| || || ||||| || || || | || || || Sbjct 282854 TTGGTAATCGTGATCTTCTGAGACTTTCCTGTTGTACGGTCGGCAGCGTTGACGTTGAGG 282913 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| || || || || |||||||| || ||||| | |||||| Sbjct 282914 ATTCCGTTGGCATCGACATCGAAGGTAACCTCGATTTGAGGAACACCTCTTGGTGCAGGT 282973 Query 281501 GGGATCCCTTCCAAA-TTAAATGTTCCC-AGATTATTATTATCTTTAGTGAATTTTCGTT 281558 ||||| || | ||| || | ||||| || || || || || || |||| Sbjct 282974 GGGATACC--CGAAAGTTCGAACTTCCCGAGGAGGTTGTTGTCCTTTGTTCTAGCACGTT 283031 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 |||||||||| | ||| || || ||| ||| || || | || || | || | | Sbjct 283032 CACCCTCGAAGACTTGAATCAATACACCAGGTTGGTTGTCGGCGTATGTGGAGAAGATTT 283091 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 || || || ||||| |||||||||||| | || | | || | || |||||| | Sbjct 283092 CAGACTTCTTGGTAGGAACTGTTGTGTTTCTCTTGATGAGAGGAGTGAAAACACCACCGG 283151 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | ||| || || ||||||| |||||| | |||| | || ||| |||| Sbjct 283152 CAGTCTCAATACCGAGGGATAGAGGAGCGACATCGAGGAGGAGGAGATCTTGGGTCTTTT 283211 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | || | |||| ||||| || ||||| | ||| || || ||||| || || |||| Sbjct 283212 CGGATGTGTCACCAGTGAGAATGGCAGCTTGGACAGCGGCGCCGTATGCGACGGCCTCAT 283271 Query 281799 CAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTG 281853 | || || | | || ||| | | || || ||||| | | |||| || ||| Sbjct 283272 CGGGGTTGATGGACTTGCATG--GCTCCTTTCCGTTGAAGTAGTCGGAAACGAGCTTTTG 283329 Query 281854 TCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 281913 || ||| ||| |||||| || || || || | ||||| || | || || || Sbjct 283330 GATT--CTTGGGA-TACGAGTGGAACCACCGACGAGGACAATCTCGTTGACAGTAGACTT 283386 Query 281914 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973 || | || || || | ||| || || || || || | | ||| || | || Sbjct 283387 GTCAATCTTCGAGTCACGGAGAACCTTCTCGACTGGGTCCATTGTGGATCTGAAGAGATC 283446 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031 | || ||||| |||||| ||| | || || || | || || || || || ||| Sbjct 283447 TTGGCACAGTTCCTCGAATCGAGCACGGGT--GATGGATGTGTAGAAGTCGATACCCTCG 283504 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || | || |||| |||||| || || || | | ||| ||||| | | || ||||| Sbjct 283505 AAGAGCGAGTCAATTTCAATGGTGGTCTGTGCAGCAGAGGATAGAGTTCTCTTCGCACGC 283564 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAA------GGCTTTTGCTGATTGATTCAAATCTGTT 282145 || |||||||| ||||| | || | ||| ||| | || ||| ||| | Sbjct 283565 TCGCATGCTGTTCTTAGACGTCTGAGAGCACGGGCATTTCCGGA--GAT----ATCCTTC 283618 Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 || | |||| |||||| |||| | || | | || || ||||| || || ||||||||| Sbjct 283619 TTGTTCTTTCGCTTGAATTCTTGAGCAAAGAAGGTAACGAGACGGTTGTCGAAATCTTCA 283678 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 || || | | || | || | ||||| | |||| ||| | || ||||||| | | Sbjct 283679 CCACCGAGATGGGTGTCACCAGCGGTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTC 283738 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | || | ||||| || |||||||| | ||| ||||| || || ||| | || | Sbjct 283739 AGGAGGGAGACATCGAATGTACCACCACCGAGATCGAAAATGAGGACGTTCTTCTCGCCG 283798 Query 282326 TCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 | | || || || ||||| || || | ||||| ||||| || || || || ||| Sbjct 283799 GACTCGCCCTTCTTGTCTAGACCGTAAGCGATGGCAGCGGCAGTGGGCTCGTTGATGATT 283858 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | || | ||||||||||| | || ||||| || |||||||| | || || ||| Sbjct 283859 CGGAGGACCTGGAGACCAGCAATGGTACCGGCATCCTTGGTGGCTTGACGCTGAGAGTCG 283918 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || || ||||| | ||||| | ||| || Sbjct 283919 TTGAAGTAGGCGGGGACAGTGACGACGGCTTGTGTGAC 283956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627012391594