Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18 167 5e-36 >seq18 Length=480229 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | ||| || || | || |||||||| |||||||| || || ||||| || Sbjct 342090 ACCACCTCTAAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGA 342031 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | || ||||| || || || || |||||||| || | || ||||| || || || Sbjct 342030 AAGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGG 341971 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTA 82761 || |||||||| ||||| ||||| ||| || ||||| ||||| || || || || | Sbjct 341970 GATGCCTTCCTTGTCTTGGATCTT-GCTCTTGACATTATCAATGGTGTCGGAAGACTCGA 341912 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct 341911 CTTCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || || ||||| | ||||| || || || ||||| || || ||||| | Sbjct 341863 TACCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTG 341804 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||| || || |||||||||||||| | || ||||| || || | Sbjct 341803 ATAGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTG 341744 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||||||||| | || || || ||||| |||||| || ||||| Sbjct 341743 GAATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTA 341684 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| |||||||| || |||||||| Sbjct 341683 CCTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826332003391