Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18 113 4e-20 seq1 102 8e-17 seq2 91.5 1e-13 >seq18 Length=480229 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || |||||||| | || |||||| |||||||| || Sbjct 342059 GTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGCTTACCA 342000 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | ||||| |||||||| ||||||||||||||||| |||||| |||| Sbjct 341999 GCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTG 341940 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 341939 ACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTCAGCGTC 341880 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 341879 TTGACAAAGATCTGCAT 341863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| ||||||||||||||||||||||| |||||||| |||||| ||||| | Sbjct 341083 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTG 341024 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | ||||||| | ||| || |||| ||||| ||| ||||| Sbjct 341023 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCC 340980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || |||||||| | ||| | | | || ||||||| Sbjct 341838 ATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCA-TCTTCGAGCT 341780 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | ||||| |||||||| || ||||| || || || |||| Sbjct 341779 GCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAATCT 341720 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| || || | | || || || | ||| | || ||||| | Sbjct 341719 TGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTCTTGCCAG 341660 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || |||||||| |||||||| Sbjct 341659 TCAGGGTCTTTACGAAGATCTGCAT 341635 >seq1 Length=2538488 Score = 102 bits (112), Expect = 8e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| | || ||| ||||||||||| || Sbjct 607967 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCA 608026 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| |||||||| |||||||| |||||||| |||||| |||| Sbjct 608027 GCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 608086 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | | || | ||||||| || ||| || |||| ||||| ||| |||| Sbjct 608087 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135 >seq2 Length=2148610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| |||||||| || || || || || || | ||| || ||||||||| |||||||| Sbjct 698755 GCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAA 698696 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 ||| ||||||| || | |||||| | || |||| ||||| ||| || ||||| Sbjct 698695 GCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAGAA 698636 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGT 120820 | ||||| || ||||| || || ||||| || | || || | | |||| ||| Sbjct 698635 GATACCCTCTACAGCAGCAAACGCCACGATGCGTTCACCAAAGGTAGACTCCTTGTCTGA 698576 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTT 120849 ||||| | | ||||||||||||||| Sbjct 698575 A-ATCCAGGTAAGAGCCCACTCGGCCTTT 698548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420383049560