Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 1e-13 seq2 89.7 1e-12 >seq5 Length=1549313 Score = 93.3 bits (102), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA-- 110745 || || ||| | |||| |||||| | ||||| ||||| |||| ||||| || | Sbjct 643480 GTACCGATGCTGCGAGTTTTCAACAATACTGCGCGTTATGTTGATCAGGGTGGCAACAAG 643539 Query 110746 -GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 || ||| | ||||||||||| |||| || |||||| ||||||| ||||| ||| | Sbjct 643540 CGACCTGGTGCCTTTGCTATCTACATCGAGCCATGGCATGCAGATATCTTTGACTTCCTT 643599 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || || || || ||||| ||| |||||| ||||| | || | || | ||| | Sbjct 643600 GATCTCCGCAAGAATCACGGAAAAGAAGAAGTCAGAGCTAGAGACCTTTTCTTTGCTCTT 643659 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 |||||| |||| | |||||| ||| || | | || || ||| ||||| | ||| Sbjct 643660 TGGATTCCAGACATGTTCATGCGACGAGTCGAGCAGAACGGTGACTGGCCTCTTTTCTGT 643719 Query 110925 CC 110926 || Sbjct 643720 CC 643721 >seq2 Length=2148610 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||| ||| || ||||| ||||| || || |||| | | ||||||||| Sbjct 698609 GTGGCGTTTGCTGCTGTAGAGGGTATCTTCTTCTCTGGCTCTTTTGCTTCCATCTTTTGG 698668 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||||| || | ||||| || | | || ||||| | |||||||||||||| Sbjct 698669 CTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATCTCGAGAGAT 698728 Query 131984 GAAGCATTGCATACTGAATTTGCT 132007 |||| | ||||| || |||||| Sbjct 698729 GAAGGTCTACATACCGACTTTGCT 698752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811750783309